miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33097_rno-mir-3595:mirbase
Length = 120
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 tgatatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgatatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagagg 43
Query: 61 aaaatccacgttttcagtatca 82
||||||||||||||||||||||
Sbjct: 42 aaaatccacgttttcagtatca 21
>32045_mmu-mir-376a:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 60
Query: 68 acgttttc 75
||||||||
Sbjct: 61 acgttttc 68
>33348_bta-mir-376a:mirbase
Length = 99
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
|||||||||||||||||||||||||||||||||| |||| | || ||||| |||||||||
Sbjct: 14 tatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaa 73
Query: 64 atccacgttttcagtatca 82
|||||||||||||||||||
Sbjct: 74 atccacgttttcagtatca 92
>33817_oar-mir-376a:mirbase
Length = 103
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
|||||||||||||||||||||||||||||||||| |||| | || ||||| |||||||||
Sbjct: 12 tatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaa 71
Query: 64 atccacgttttcagtatca 82
|||||||||||||||||||
Sbjct: 72 atccacgttttcagtatca 90
>33818_oar-mir-376a:mirbase
Length = 103
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
|||||||||||||||||||||||||||||||||| |||| | || ||||| |||||||||
Sbjct: 12 tatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagaggaaa 71
Query: 64 atccacgttttcagtatca 82
|||||||||||||||||||
Sbjct: 72 atccacgttttcagtatca 90
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
|||||||||||||||||||||||||||||||||| |||| || | ||||| |||||||||
Sbjct: 3 tatttaaaaggtagattctccttctatgagtacattatttattattaatcatagaggaaa 62
Query: 64 atccacgttttcagtatc 81
||||||||||||||||||
Sbjct: 63 atccacgttttcagtatc 80
>27156_eca-mir-376a:mirbase
Length = 68
Score = 111 bits (56), Expect = 8e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacaatatttatgattaatcatagaggaaaatcc 60
Query: 68 acgttttc 75
||||||||
Sbjct: 61 acgttttc 68
>27879_mml-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 68 acgttttc 75
||||||||
Sbjct: 61 acgttttc 68
>28617_hsa-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 68 acgttttc 75
||||||||
Sbjct: 61 acgttttc 68
>30980_ppy-mir-376a-1:mirbase
Length = 68
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 taaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcc 67
|||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||
Sbjct: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
Query: 68 acgttttc 75
||||||||
Sbjct: 61 acgttttc 68
>30353_ptr-mir-376a-1:mirbase
Length = 67
Score = 101 bits (51), Expect = 7e-23
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 9 aaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatcca 68
||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||
Sbjct: 1 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 60
Query: 69 cgttttc 75
|||||||
Sbjct: 61 cgttttc 67
>26823_cfa-mir-376a-1:mirbase
Length = 58
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 14 gtagattctccttctatgagtacaatattaatgactaatcgtagaggaaaatccacgt 71
|||||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||
Sbjct: 1 gtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgt 58
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| |||||||||| ||| || ||| ||||| |||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 64 atccacgttttcagtatc 81
||||||||||||||||||
Sbjct: 63 atccacgttttcagtatc 80
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| |||||||||| ||| || ||| ||||| |||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 64 atccacgttttcagtatc 81
||||||||||||||||||
Sbjct: 63 atccacgttttcagtatc 80
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| |||||||||| ||| || ||| ||||| |||||||||
Sbjct: 2 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 61
Query: 64 atccacgttttcagtatc 81
||||||||||||||||||
Sbjct: 62 atccacgttttcagtatc 79
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| |||||||||| ||| || ||| ||||| |||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 64 atccacgttttcagtatc 81
||||||||||||||||||
Sbjct: 63 atccacgttttcagtatc 80
>33351_bta-mir-376d:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 6e-11
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| ||||||||||| ||| || ||| ||||| |||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaa 62
Query: 64 atccacgttttcagtatca 82
|||||| ||||| ||||||
Sbjct: 63 atccacattttcggtatca 81
>33823_oar-mir-376d:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 6e-11
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
||||||||||||||||| |||||||||| ||| || ||| ||||| |||||||||
Sbjct: 19 tatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagaggaaa 78
Query: 64 atccacgttttcagtatca 82
|||||| ||||||||||||
Sbjct: 79 atccacattttcagtatca 97
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 59 taatcatagaggaaaatccatgttttcagtatca 92
>27157_eca-mir-376b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 49 taatcatagaggaaaatccatgttttcagtatca 82
>27881_mml-mir-376b:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 60 taatcatagaggaaaatccatgttttcagtatca 93
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 60 taatcatagaggaaaatccatgttttcagtatca 93
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 59 taatcatagaggaaaatccatgttttcagtatca 92
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 60 taatcatagaggaaaatccatgttttcagtatca 93
>33349_bta-mir-376b:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 54 taatcatagaggaaaatccatgttttcagtatca 87
>33819_oar-mir-376b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 59 taatcatagaggaaaatccatgttttcagtatca 92
>33820_oar-mir-376b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||||||||| |||||||||||||
Sbjct: 59 taatcatagaggaaaatccatgttttcagtatca 92
>26827_cfa-mir-376c:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatca 82
||||||||| ||||||||||||||||||
Sbjct: 57 tagaggaaattccacgttttcagtatca 84
>33350_bta-mir-376c:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatca 82
||||||||| ||||||||||||||||||
Sbjct: 57 tagaggaaattccacgttttcagtatca 84
>33821_oar-mir-376c:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatca 82
||||||||| ||||||||||||||||||
Sbjct: 64 tagaggaaattccacgttttcagtatca 91
>33822_oar-mir-376c:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatca 82
||||||||| ||||||||||||||||||
Sbjct: 64 tagaggaaattccacgttttcagtatca 91
>34080_ssc-mir-376b:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatc 81
||||||||| |||||||||||||||||
Sbjct: 52 tagaggaaattccacgttttcagtatc 78
>34081_ssc-mir-376c:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatc 81
||||||||| |||||||||||||||||
Sbjct: 52 tagaggaaattccacgttttcagtatc 78
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||| |||||| ||||||||||||
Sbjct: 49 taatcatagaggaacatccactttttcagtatca 82
>32890_rno-mir-376b:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||| |||||| ||||||||||||
Sbjct: 51 taatcatagaggaacatccactttttcagtatca 84
>32891_rno-mir-376b:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgttttcagtatca 82
||||| |||||||| |||||| ||||||||||||
Sbjct: 51 taatcatagaggaacatccactttttcagtatca 84
>26824_cfa-mir-376a-2:mirbase
Length = 58
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgt 71
||||| |||||||||||||||||
Sbjct: 36 taatcatagaggaaaatccacgt 58
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 taatcgtagaggaaaatccacgt 71
||||| |||||||||||||||||
Sbjct: 37 taatcatagaggaaaatccacgt 59
>32892_rno-mir-376c:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
|||||||||||| ||| |||||||||| || |||| |||| ||| | |||||||||
Sbjct: 5 tatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
Query: 64 atccacgttttcagt 78
| ||||||||||||
Sbjct: 65 tttcacgttttcagt 79
>33824_oar-mir-376e:mirbase
Length = 106
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatc 81
||||||||||||||| |||| ||||||
Sbjct: 65 tagaggaaaatccacattttaagtatc 91
>33825_oar-mir-376e:mirbase
Length = 106
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 55 tagaggaaaatccacgttttcagtatc 81
||||||||||||||| |||| ||||||
Sbjct: 65 tagaggaaaatccacattttaagtatc 91
