miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32047_mmu-mir-376c:mirbase
Length = 86
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 2 ttggtatttaaaaggtggatattccttctatgtttatgctttttgtgattaaacatagag 61
Query: 61 gaaatttcacgttttcagtgtcaa 84
||||||||||||||||||||||||
Sbjct: 62 gaaatttcacgttttcagtgtcaa 85
>26827_cfa-mir-376c:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2 ttggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagag 61
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||||| |||||||||||| ||||
Sbjct: 62 gaaattccacgttttcagtatcaa 85
>33350_bta-mir-376c:mirbase
Length = 86
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 2 ttggtatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagag 61
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||||| |||||||||||| ||||
Sbjct: 62 gaaattccacgttttcagtatcaa 85
>33821_oar-mir-376c:mirbase
Length = 105
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct: 9 ttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagag 68
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||||| |||||||||||| ||||
Sbjct: 69 gaaattccacgttttcagtatcaa 92
>33822_oar-mir-376c:mirbase
Length = 105
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct: 9 ttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacatagag 68
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||||| |||||||||||| ||||
Sbjct: 69 gaaattccacgttttcagtatcaa 92
>34081_ssc-mir-376c:mirbase
Length = 78
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 1 tatttaaaaggtggatattccttctatgtttatgttatttgtggttaaacatagaggaaa 60
Query: 65 tttcacgttttcagt 79
|| ||||||||||||
Sbjct: 61 ttccacgttttcagt 75
>34080_ssc-mir-376b:mirbase
Length = 78
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 1 tatttaaaaggtggctattccttctatgtttatgttatttgtggttaaacatagaggaaa 60
Query: 65 tttcacgttttcagt 79
|| ||||||||||||
Sbjct: 61 ttccacgttttcagt 75
>27882_mml-mir-376c:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 70 cgtttt 75
||||||
Sbjct: 61 cgtttt 66
>28620_hsa-mir-376c:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 70 cgtttt 75
||||||
Sbjct: 61 cgtttt 66
>30983_ppy-mir-376c:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcca 60
Query: 70 cgtttt 75
||||||
Sbjct: 61 cgtttt 66
>30356_ptr-mir-376c:mirbase
Length = 65
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 11 aaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttcac 70
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct: 1 aaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattccac 60
Query: 71 gtttt 75
|||||
Sbjct: 61 gtttt 65
>27158_eca-mir-376c:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 10 aaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaatttca 69
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||
Sbjct: 1 aaaaggtggatattccttctatgtttatgttgtttatggttaaacatagaggaaattcca 60
Query: 70 cgtttt 75
||||||
Sbjct: 61 cgtttt 66
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgttta 36
||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtatttaaaaggtggatattccttctatgttta 45
>27881_mml-mir-376b:mirbase
Length = 100
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
||||||||||||| |||||||||||||||||||||| | ||| || |||| |||||||
Sbjct: 11 ttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagag 70
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | || ||||||||| ||||
Sbjct: 71 gaaaatccatgttttcagtatcaa 94
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
||||||||||||| |||||||||||||||||||||| | ||| || |||| |||||||
Sbjct: 11 ttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagag 70
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | || ||||||||| ||||
Sbjct: 71 gaaaatccatgttttcagtatcaa 94
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
||||||||||||| |||||||||||||||||||||| | ||| || |||| |||||||
Sbjct: 10 ttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagag 69
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | || ||||||||| ||||
Sbjct: 70 gaaaatccatgttttcagtatcaa 93
>33349_bta-mir-376b:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgttta 36
||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttggtatttaaaaggtggatattccttctatgttta 40
>33819_oar-mir-376b:mirbase
Length = 106
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgttta 36
||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtatttaaaaggtggatattccttctatgttta 45
>33820_oar-mir-376b:mirbase
Length = 106
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgttta 36
||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtatttaaaaggtggatattccttctatgttta 45
>27157_eca-mir-376b:mirbase
Length = 82
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 2 tggtatttaaaaggtggatattccttctatgttta 36
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtatttaaaaggtggatattccttctatgttta 35
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgttta 36
||||||||||||| ||||||||||||||||||||||
Sbjct: 11 ttggtatttaaaacgtggatattccttctatgttta 46
>32890_rno-mir-376b:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatg 32
||||||||||||||||||||||||||||||||
Sbjct: 2 ttggtatttaaaaggtggatattccttctatg 33
>32891_rno-mir-376b:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatg 32
||||||||||||||||||||||||||||||||
Sbjct: 2 ttggtatttaaaaggtggatattccttctatg 33
>33348_bta-mir-376a:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||| ||| |||||||||| || |||||| |||||| |||||||
Sbjct: 10 ttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagag 69
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | |||||||||||| ||||
Sbjct: 70 gaaaatccacgttttcagtatcaa 93
>33817_oar-mir-376a:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||| ||| |||||||||| || |||||| |||||| |||||||
Sbjct: 8 ttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagag 67
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | |||||||||||| ||||
Sbjct: 68 gaaaatccacgttttcagtatcaa 91
>33818_oar-mir-376a:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||| ||| |||||||||| || |||||| |||||| |||||||
Sbjct: 8 ttggtatttaaaaggtagattctccttctatgagtacattatttacgattaatcatagag 67
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | |||||||||||| ||||
Sbjct: 68 gaaaatccacgttttcagtatcaa 91
>33823_oar-mir-376d:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagag 60
|||||||||||||||| ||| ||||||||||| ||| || || ||||||| |||||||
Sbjct: 15 ttggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcatagag 74
Query: 61 gaaatttcacgttttcagtgtcaa 84
|||| | ||| |||||||| ||||
Sbjct: 75 gaaaatccacattttcagtatcaa 98
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 tggtatttaaaaggtggatattccttctatg 32
|||||||||||||||||||||||||||||||
Sbjct: 1 tggtatttaaaaggtggatattccttctatg 31
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| ||||||||||| ||| | || ||| |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| ||||||||||| ||| | || ||| |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| ||||||||||| ||| | || ||| |||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| |||||||||| || ||||||| ||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttattattaatcatagagga 60
Query: 63 aatttcacgttttcagt 79
|| | ||||||||||||
Sbjct: 61 aaatccacgttttcagt 77
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 4 gtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaa 63
||||||||||||| ||| ||||||||||| ||| | || ||| |||| ||||||||||
Sbjct: 1 gtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 60
Query: 64 atttcacgttttcagt 79
| | ||||||||||||
Sbjct: 61 aatccacgttttcagt 76
>33824_oar-mir-376e:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgttta 36
|||| |||||||||||||||||||||||||||
Sbjct: 14 tattcaaaaggtggatattccttctatgttta 45
>33825_oar-mir-376e:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgttta 36
|||| |||||||||||||||||||||||||||
Sbjct: 14 tattcaaaaggtggatattccttctatgttta 45
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 14 ggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
||||||| ||||||||||||||| || |||||| |||| |||||||||||
Sbjct: 1 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaa 51
>33351_bta-mir-376d:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 6e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 ggtatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagagga 62
|||||||||||||| ||| ||||||||||| ||| || || ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagagga 60
Query: 63 aa 64
||
Sbjct: 61 aa 62
>27156_eca-mir-376a:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
||||||||||||| ||||||||||| | |||||||||
Sbjct: 32 tatttatgattaatcatagaggaaaatccacgttttc 68
>27879_mml-mir-376a-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
||||||||||||| ||||||||||| | |||||||||
Sbjct: 32 tatttatgattaatcatagaggaaaatccacgttttc 68
>28617_hsa-mir-376a-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
||||||||||||| ||||||||||| | |||||||||
Sbjct: 32 tatttatgattaatcatagaggaaaatccacgttttc 68
>30353_ptr-mir-376a-1:mirbase
Length = 67
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
||||||||||||| ||||||||||| | |||||||||
Sbjct: 31 tatttatgattaatcatagaggaaaatccacgttttc 67
>30980_ppy-mir-376a-1:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaatttcacgttttc 76
||||||||||||| ||||||||||| | |||||||||
Sbjct: 32 tatttatgattaatcatagaggaaaatccacgttttc 68
>26823_cfa-mir-376a-1:mirbase
Length = 58
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tatttatgattaaacatagaggaaa 64
||||||||||||| |||||||||||
Sbjct: 26 tatttatgattaatcatagaggaaa 50
>33097_rno-mir-3595:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 5 tatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||||| ||| |||||||||| || |||| |||| ||| | |||||||||
Sbjct: 99 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 40
Query: 65 tttcacgttttcagtgtcaa 84
| |||||||||||| ||||
Sbjct: 39 atccacgttttcagtatcaa 20
>32889_rno-mir-376a:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 5 tatttaaaaggtggatattccttctatgtttatggtatttatgattaaacatagaggaaa 64
|||||||||||| ||| |||||||||| || |||| |||| ||| | |||||||||
Sbjct: 4 tatttaaaaggtagattctccttctatgagtacaatattaatgactaatcgtagaggaaa 63
Query: 65 tttcacgttttcagt 79
| ||||||||||||
Sbjct: 64 atccacgttttcagt 78
