miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33355_bta-mir-379:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tggttcctgcagaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaa 59
|||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||||
Sbjct: 1 tggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaa 60
Query: 60 catggtccactaactctcagtatcca 85
||||||||||||||||||||||||||
Sbjct: 61 catggtccactaactctcagtatcca 86
>32051_mmu-mir-379:mirbase
Length = 66
Score = 115 bits (58), Expect = 5e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 11 agaggtggtagactatggaacgtaggcgttatgtttctgacctatgtaacatggtccact 70
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgtttttgacctatgtaacatggtccact 60
Query: 71 aactct 76
||||||
Sbjct: 61 aactct 66
>33828_oar-mir-379:mirbase
Length = 126
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 ggttcctgcagaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaac 60
||||||||||||| |||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
Query: 61 atggtccactaactctcagtatcca 85
| |||||||||||||||||||||||
Sbjct: 89 acggtccactaactctcagtatcca 113
>33829_oar-mir-379:mirbase
Length = 126
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 ggttcctgcagaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaac 60
||||||||||||| |||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
Query: 61 atggtccactaactctcagtatcca 85
| |||||||||||||||||||||||
Sbjct: 89 acggtccactaactctcagtatcca 113
>28632_hsa-mir-379:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 agaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccac 69
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
Query: 70 taactct 76
|||||||
Sbjct: 61 taactct 67
>30359_ptr-mir-379:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 61/62 (98%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 16 tggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccactaact 74
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5 tggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccactaact 64
Query: 75 ct 76
||
Sbjct: 65 ct 66
>27885_mml-mir-379:mirbase
Length = 67
Score = 101 bits (51), Expect = 8e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 agaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccac 69
|||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 70 taactct 76
|||||||
Sbjct: 61 taactct 67
>30986_ppy-mir-379:mirbase
Length = 67
Score = 101 bits (51), Expect = 8e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 agaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccac 69
|||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 70 taactct 76
|||||||
Sbjct: 61 taactct 67
>27161_eca-mir-379:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 agaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccac 69
|||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggctttatgatttttgacctatgtaacatggtccac 60
Query: 70 taactct 76
|||||||
Sbjct: 61 taactct 67
>26830_cfa-mir-379:mirbase
Length = 59
Score = 77.8 bits (39), Expect = 1e-15
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 16 tggtagactatggaacgtaggcgttatg-tttctgacctatgtaacatggtccactaac 73
|||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||
Sbjct: 1 tggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccactaac 59
>27170_eca-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>27894_mml-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>28641_hsa-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>30366_ptr-mir-411:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 45 tgacgtatgtaacacggtccactaaccctcagtatc 80
>30995_ppy-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32062_mmu-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32905_rno-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
>33364_bta-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>33840_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
>33841_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
>33842_oar-mir-411b:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcag 79
|||| |||||||||||||||||||| ||||||
Sbjct: 54 tgacgtatgtaacatggtccactaattctcag 85
>33843_oar-mir-411b:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcag 79
|||| |||||||||||||||||||| ||||||
Sbjct: 54 tgacgtatgtaacatggtccactaattctcag 85
>34087_ssc-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 48 tgacctatgtaacatggtccactaactctcagtatc 83
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
