miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33073_rno-mir-3579:mirbase
Length = 113
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1 acctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 acctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtc 37
Query: 61 cacatcttctcattatc 77
|||||||||||||||||
Sbjct: 36 cacatcttctcattatc 20
>32052_mmu-mir-380:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>32053_mmu-mir-380:mirbase
Length = 61
Score = 121 bits (61), Expect = 7e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>28633_hsa-mir-380:mirbase
Length = 61
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>30360_ptr-mir-380:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 4e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 9 agatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatctt 68
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 1 agatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatctt 60
>27886_mml-mir-380:mirbase
Length = 61
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacgtct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>30987_ppy-mir-380:mirbase
Length = 60
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccac 63
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56
>33830_oar-mir-380:mirbase
Length = 103
Score = 81.8 bits (41), Expect = 6e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 acctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtc 60
||||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||||
Sbjct: 13 acctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtc 72
Query: 61 cacatcttctcattatc 77
||| |||||||| ||||
Sbjct: 73 cacgtcttctcaatatc 89
>33831_oar-mir-380:mirbase
Length = 103
Score = 81.8 bits (41), Expect = 6e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 acctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtc 60
||||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||||
Sbjct: 13 acctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtc 72
Query: 61 cacatcttctcattatc 77
||| |||||||| ||||
Sbjct: 73 cacgtcttctcaatatc 89
>26831_cfa-mir-380:mirbase
Length = 57
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 11 atggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccac 63
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||
Sbjct: 1 atggttgaccatagaacatgcgctagctctatgtcgtatgtaatatggtccac 53
>33356_bta-mir-380:mirbase
Length = 61
Score = 65.9 bits (33), Expect = 4e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
||||||||||||||||||||||||||| ||| ||||||||||| | |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>33357_bta-mir-380:mirbase
Length = 61
Score = 65.9 bits (33), Expect = 4e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
||||||||||||||||||||||||||| ||| ||||||||||| | |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 68 t 68
|
Sbjct: 61 t 61
>27162_eca-mir-380:mirbase
Length = 61
Score = 50.1 bits (25), Expect = 2e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 8 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 67
|||| ||||||||||||| |||||||| ||| |||||||||| |||||||||| |||
Sbjct: 1 aagacggttgaccatagagcatgcgctgtctctaggtcgtatgtaatatggtccacgtct 60
Query: 68 t 68
|
Sbjct: 61 t 61
