miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32069_mmu-mir-429:mirbase
Length = 83
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 3 cctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtc 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cctgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtc 60
Query: 63 tggtaatgccgtccatcca 81
|||||||||||||||||||
Sbjct: 61 tggtaatgccgtccatcca 79
>25673_xla-mir-429:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 11 tggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatg 70
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 60
Query: 71 ccgtccat 78
||||||||
Sbjct: 61 ccgtccat 68
>26843_cfa-mir-429:mirbase
Length = 85
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 2 gcctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgt 61
|||||||||||| ||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 2 gcctgctgatgggcgtcttaccagacacggttagatctgggttctggtgtctaatactgt 61
Query: 62 ctggtaatgccgtccatccatggc 85
||||||||||||| ||||||||||
Sbjct: 62 ctggtaatgccgttcatccatggc 85
>33372_bta-mir-429:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 5e-18
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 gcctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgt 61
|||||| ||||| ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 2 gcctgccgatgggcgtcttaccagacacggttagatctggtcct-tctgtctaatactgt 60
Query: 62 ctggtaatgccgtccatcc 80
|||||||||||||||||||
Sbjct: 61 ctggtaatgccgtccatcc 79
>34094_ssc-mir-429:mirbase
Length = 81
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 9 gatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaa 68
||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||
Sbjct: 7 gatgggtgtcttaccaggcacggttagatctggttct-tctgtctaatactgtctggtaa 65
Query: 69 tgccgtccat 78
||||||||||
Sbjct: 66 tgccgtccat 75
>27176_eca-mir-429:mirbase
Length = 67
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 5 gtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgccgtc 64
Query: 76 cat 78
|||
Sbjct: 65 cat 67
>26026_gga-mir-429:mirbase
Length = 84
Score = 75.8 bits (38), Expect = 4e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 2 gcctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgt 61
|||||||||| | ||||||||||| || ||||||||| | | | |||||||||||||||
Sbjct: 1 gcctgctgattgctgtcttaccaggcaaagttagatctagctatttctgtctaatactgt 60
Query: 62 ctggtaatgccgtc 75
||||||||||||||
Sbjct: 61 ctggtaatgccgtc 74
>31552_oan-mir-429:mirbase
Length = 112
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 tgcctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactg 60
||||||||||| | |||||||||||||| |||||||||| | | | |||||||||||
Sbjct: 12 tgcctgctgattggtgtcttaccagacaaagttagatctgactattttcgtctaatactg 71
Query: 61 tctggtaatgccgtc 75
|||||||||||||||
Sbjct: 72 tctggtaatgccgtc 86
>27450_mdo-mir-429:mirbase
Length = 72
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 15 tgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgcc 72
|||||||||||||| ||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
>31003_ppy-mir-429:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggccgt--ctgtctaatactgtctggtaaaaccgtc 73
Query: 76 catcc 80
|||||
Sbjct: 74 catcc 78
>34400_dre-mir-429:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 8 tgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggta 67
||||||| |||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 6 tgatggacgtcttaccagacatggttagatgtaataacttgtgtctaatactgtctggta 65
Query: 68 atgccgtccatc 79
||||||||||||
Sbjct: 66 atgccgtccatc 77
>34652_fru-mir-429:mirbase
Length = 76
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 14 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgccgtc 73
Query: 76 cat 78
|||
Sbjct: 74 cat 76
>34800_tni-mir-429:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
|||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacatggttagatgtaattattgttgtctaatactgtctggtaatgccgtc 75
Query: 76 cat 78
|||
Sbjct: 76 cat 78
>27902_mml-mir-429:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
||||||||||||| ||||||| |||| | | ||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacacggttagacctggctct--ctgtctaatactgtctggtaaaaccgtc 73
Query: 76 catcc 80
|||||
Sbjct: 74 catcc 78
>28649_hsa-mir-429:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 16 gtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatgccgtc 75
||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggccct--ctgtctaatactgtctggtaaaaccgtc 73
Query: 76 catcc 80
|||||
Sbjct: 74 catcc 78
>25860_xtr-mir-429:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 atgtcttaccagacatggttagatctggatgtatct-gtctaatactgtctggtaatgcc 72
||||||||||||||| |||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 14 atgtcttaccagacaaggttagatctagttac-tctcgtctaatactgtctggtaatgcc 72
Query: 73 gt 74
||
Sbjct: 73 gt 74
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 tgtctaatactgtctggtaatgcc 72
|||||||||||| |||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgcc 86
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtctggtaatg 70
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 ctaatactgtctggtaatg 70
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
