miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32643_rno-let-7d:mirbase
Length = 98
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1 ggccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ggccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgcccta 37
Query: 61 aaactatgcaacctactacctcttcctaggagccc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 36 aaactatgcaacctactacctcttcctaggagccc 2
>31757_mmu-let-7d:mirbase
Length = 103
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1 ggccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ggccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgcccta 39
Query: 61 aaactatgcaacctactacctcttcctagga 91
|||||||||||||||||||||||||||||||
Sbjct: 38 aaactatgcaacctactacctcttcctagga 8
>27322_mdo-let-7d:mirbase
Length = 106
Score = 170 bits (86), Expect = 1e-43
Identities = 92/94 (97%)
Strand = Plus / Minus
Query: 2 gccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaa 61
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 97 gccctaagaaaggcagcaggttgtatagttaactccttgtgggcaaaatccctgccctaa 38
Query: 62 aactatgcaacctactacctcttcctaggagccc 95
||||||||||||||||||||||||||||||||||
Sbjct: 37 aactatgcaacctactacctcttcctaggagccc 4
>26932_eca-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 87 cctaagaaaggcagcaggtcgtatagttatctccttgtgggcaaaatccctgccctaaaa 28
Query: 64 ctatgcaacctactacctcttcctagg 90
|||||||||||||||||||||||||||
Sbjct: 27 ctatgcaacctactacctcttcctagg 1
>27634_mml-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 87 cctaagaaaggcagcaggtcgtatagttacctccttgtgggcaaaatccctgccctaaaa 28
Query: 64 ctatgcaacctactacctcttcctagg 90
|||||||||||||||||||||||||||
Sbjct: 27 ctatgcaacctactacctcttcctagg 1
>28344_hsa-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 87 cctaagaaaggcagcaggtcgtatagttacctccttgtgggcaaaatccctgccctaaaa 28
Query: 64 ctatgcaacctactacctcttcctagg 90
|||||||||||||||||||||||||||
Sbjct: 27 ctatgcaacctactacctcttcctagg 1
>30736_ppy-let-7d:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 87 cctaagaaaggcagcaggtcgtatagttacctccttgtgggcaaaatccctgccctaaaa 28
Query: 64 ctatgcaacctactacctcttcctagg 90
|||||||||||||||||||||||||||
Sbjct: 27 ctatgcaacctactacctcttcctagg 1
>30131_ptr-let-7d:mirbase
Length = 86
Score = 155 bits (78), Expect = 7e-39
Identities = 84/86 (97%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 86 cctaagaaaggcagcaggtcgtatagttacctccttgtgggcaaaatccctgccctaaaa 27
Query: 64 ctatgcaacctactacctcttcctag 89
||||||||||||||||||||||||||
Sbjct: 26 ctatgcaacctactacctcttcctag 1
>33113_bta-let-7d:mirbase
Length = 87
Score = 149 bits (75), Expect = 4e-37
Identities = 84/87 (96%)
Strand = Plus / Minus
Query: 4 cctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaa 63
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 87 cctaagaaaggcagcaggtcgtatagttacctccttgtgggcaaaatccctgcccgaaaa 28
Query: 64 ctatgcaacctactacctcttcctagg 90
|||||||||||||||||||||||||||
Sbjct: 27 ctatgcaacctactacctcttcctagg 1
>25873_gga-let-7d:mirbase
Length = 103
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Minus
Query: 2 gccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaa 61
||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||
Sbjct: 97 gccctaagaaaggcagcaggttgtatagttacctccttgtgagcaaaatccctgccctaa 38
Query: 62 aactatgcaacctactacctcttcctaggagccc 95
|||||||||||| |||||||||||||||||||||
Sbjct: 37 aactatgcaacccactacctcttcctaggagccc 4
>31411_oan-let-7d:mirbase
Length = 116
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Minus
Query: 2 gccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaa 61
||||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||
Sbjct: 105 gccctaagaaaggcagcaggttgtatagttaacaccttatgagcaaaatcactgccctaa 46
Query: 62 aactatgcaacctactacctcttcctaggagccc 95
||||||||||||||||||||||||||||||||||
Sbjct: 45 aactatgcaacctactacctcttcctaggagccc 12
>26382_tgu-let-7d:mirbase
Length = 92
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 2 gccctaagaaaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaa 61
||||||||||||||||||||| ||||||||| |||||| || |||||||| |||||||||
Sbjct: 92 gccctaagaaaggcagcaggttgtatagttacctccttctgagcaaaatccctgccctaa 33
Query: 62 aactatgcaacctactacctcttcctaggagc 93
||||||||||||||||||||||||||||||||
Sbjct: 32 aactatgcaacctactacctcttcctaggagc 1
>26375_tgu-let-7a-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 55 gccctaaaactatgcaacctactacctc 82
||||||||||||| ||||||||||||||
Sbjct: 39 gccctaaaactatacaacctactacctc 12
>25868_gga-let-7a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 40 ccctaaaactatacaacctactacctc 14
>25870_gga-let-7a-3:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 31 ccctaaaactatacaacctactacctc 5
>26377_tgu-let-7a-3:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 88 ccctaaaactatacaacctactacctc 62
>27318_mdo-let-7a-1:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 42 ccctaaaactatacaacctactacctc 16
>27629_mml-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 33 ccctaaaactatacaacctactacctc 7
>28339_hsa-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 33 ccctaaaactatacaacctactacctc 7
>30126_ptr-let-7a-1:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 32 ccctaaaactatacaacctactacctc 6
>30731_ppy-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 33 ccctaaaactatacaacctactacctc 7
>31752_mmu-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 40 ccctaaaactatacaacctactacctc 14
>32638_rno-let-7a-1:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 40 ccctaaaactatacaacctactacctc 14
>33108_bta-let-7a-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 33 ccctaaaactatacaacctactacctc 7
>33899_ssc-let-7a-2:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 38 ccctaaaactatacaacctactacctc 12
>34165_dre-let-7a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 38 ccctaaaactatacaacctactacctc 12
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 31 ccctaaaactatacaacctactacctc 5
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 39 ccctaaaactatacaacctactacctc 13
>25408_pma-let-7a-1:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctcttcctaggagccc 95
|||| ||||||| |||||||||||||| || ||||||||
Sbjct: 43 cccttaaactatacaacctactacctcaacccaggagccc 4
>25871_gga-let-7b:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactccttgt--gggcaaaatctctgccctaaaactatg 68
||||||| |||| ||||||||| ||||| | |||||||||| || |||| |||| |
Sbjct: 80 aaggcagtaggttgtatagttatctcctgattggggcaaaatcactaccctgaaaccaca 21
Query: 69 caacctactacctcttcct 87
|||||||||||||| ||||
Sbjct: 20 caacctactacctcatcct 2
>26379_tgu-let-7b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 65/79 (82%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactccttgt--gggcaaaatctctgccctaaaactatg 68
||||||| |||| ||||||||| ||||| | |||||||||| || |||| |||| |
Sbjct: 85 aaggcagtaggttgtatagttatctcctgattggggcaaaatcactaccctgaaaccaca 26
Query: 69 caacctactacctcttcct 87
|||||||||||||| ||||
Sbjct: 25 caacctactacctcatcct 7
>27632_mml-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaactatgca 70
||||||| |||| ||||||||| || || |||||| ||| ||||||| |||| | ||
Sbjct: 78 aaggcagtaggttgtatagttatcttctgaggggcaacatcactgccctgaaaccacaca 19
Query: 71 acctactacctc 82
||||||||||||
Sbjct: 18 acctactacctc 7
>30129_ptr-let-7b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaactatgca 70
||||||| |||| ||||||||| || || |||||| ||| ||||||| |||| | ||
Sbjct: 77 aaggcagtaggttgtatagttatcttctgaggggcaacatcactgccctgaaaccacaca 18
Query: 71 acctactacctc 82
||||||||||||
Sbjct: 17 acctactacctc 6
>30734_ppy-let-7b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactccttgtgggcaaaatctctgccctaaaactatgca 70
||||||| |||| ||||||||| || || |||||| ||| ||||||| |||| | ||
Sbjct: 78 aaggcagtaggttgtatagttatcttctgaggggcaacatcactgccctgaaaccacaca 19
Query: 71 acctactacctc 82
||||||||||||
Sbjct: 18 acctactacctc 7
>34171_dre-let-7b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 11 aaggcagcaggtcgtatagttaactcct 38
||||||| |||| |||||||||||||||
Sbjct: 84 aaggcagtaggttgtatagttaactcct 57
