miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31758_mmu-let-7e:mirbase
Length = 93
Score = 184 bits (93), Expect = 1e-47
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 16 ggcgcagcctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaac 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggcgcagcctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaac 34
Query: 76 tatacaacctcctacctcagcccggggggcgcg 108
|||||||||||||||||||||||||||||||||
Sbjct: 33 tatacaacctcctacctcagcccggggggcgcg 1
>32644_rno-let-7e:mirbase
Length = 93
Score = 184 bits (93), Expect = 1e-47
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 16 ggcgcagcctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaac 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggcgcagcctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaac 34
Query: 76 tatacaacctcctacctcagcccggggggcgcg 108
|||||||||||||||||||||||||||||||||
Sbjct: 33 tatacaacctcctacctcagcccggggggcgcg 1
>27635_mml-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 79 cctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaa 20
Query: 83 cctcctacctcagcccggg 101
|||||||||||||||||||
Sbjct: 19 cctcctacctcagcccggg 1
>28345_hsa-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 79 cctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaa 20
Query: 83 cctcctacctcagcccggg 101
|||||||||||||||||||
Sbjct: 19 cctcctacctcagcccggg 1
>30737_ppy-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 79 cctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaa 20
Query: 83 cctcctacctcagcccggg 101
|||||||||||||||||||
Sbjct: 19 cctcctacctcagcccggg 1
>33114_bta-let-7e:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 79 cctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaa 20
Query: 83 cctcctacctcagcccggg 101
|||||||||||||||||||
Sbjct: 19 cctcctacctcagcccggg 1
>30132_ptr-let-7e:mirbase
Length = 78
Score = 139 bits (70), Expect = 5e-34
Identities = 76/78 (97%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 78 cctggggaaagctaggaggccgtatagtgatctccttgggtgtcctcctcaactatacaa 19
Query: 83 cctcctacctcagcccgg 100
||||||||||||||||||
Sbjct: 18 cctcctacctcagcccgg 1
>26933_eca-let-7e:mirbase
Length = 79
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Minus
Query: 23 cctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaa 82
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 79 cctggggaaagctaggaggccgtatagtgatctccgtgggtgtcctcctcaactatacaa 20
Query: 83 cctcctacctcagcccggg 101
|||||||||||||||||||
Sbjct: 19 cctcctacctcagcccggg 1
>33901_ssc-let-7e:mirbase
Length = 80
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Minus
Query: 24 ctggggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaac 83
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 80 ctggggaaagctaggaggccgtatagtgatctccgtgggtgtcctcctcaactatacaac 21
Query: 84 ctcctacctcagcccgggg 102
|||||||||||||||||||
Sbjct: 20 ctcctacctcagcccgggg 2
>26609_cfa-let-7e:mirbase
Length = 67
Score = 109 bits (55), Expect = 5e-25
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 28 ggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctcc 87
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 67 ggaaagctaggaggccgtatagtgatctccgtgggtgtcctcctcaactatacaacctcc 8
Query: 88 tacctca 94
|||||||
Sbjct: 7 tacctca 1
>25676_xtr-let-7a:mirbase
Length = 89
Score = 69.9 bits (35), Expect = 4e-13
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
||||||| |||||||| ||| ||| ||||||| ||||| ||||||||||||||||||
Sbjct: 81 gggaaagataggaggctgtacagttatctcctttggtgttatcctcaactatacaaccta 22
Query: 87 ctacctcagcc 97
|||||||||||
Sbjct: 21 ctacctcagcc 11
>34525_fru-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
|||||||||||||||| ||| ||| ||||||| |||||| ||||||||||||||||
Sbjct: 73 gggaaagctaggaggctgtacagtcatctcctgtggtgtcactctcaactatacaaccta 14
Query: 87 ctacctca 94
||||||||
Sbjct: 13 ctacctca 6
>34673_tni-let-7a-1:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 27 gggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctc 86
|||||||||||||||| ||| ||| ||||||| |||||| ||||||||||||||||
Sbjct: 73 gggaaagctaggaggctgtacagttatctcctgtggtgtcactctcaactatacaaccta 14
Query: 87 ctacctca 94
||||||||
Sbjct: 13 ctacctca 6
>34166_dre-let-7a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 aactatacaacctcctacctcagcccggggg 103
||||||||||||| ||||||||||| |||||
Sbjct: 32 aactatacaacctactacctcagcctggggg 2
>27630_mml-let-7a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 28 ggaaagctaggaggccgtatagtgatctcctcgggtgtcttcctcaactatacaacctcc 87
||||||||||||||| ||| ||| |||||| | ||| | || ||||||||||||| |
Sbjct: 71 ggaaagctaggaggctgtacagttatctcccttgatgtaattctaaactatacaacctac 12
Query: 88 tacctcagcc 97
||||||||||
Sbjct: 11 tacctcagcc 2
>38846_lgi-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 70 ctcaactatacaacctcctacctca 94
|||||||||||||||| ||||||||
Sbjct: 45 ctcaactatacaacctactacctca 21
>24642_bfl-let-7a-2:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 70 ctcaactatacaacctcctacctca 94
|||||||||||||||| ||||||||
Sbjct: 45 ctcaactatacaacctactacctca 21
>32639_rno-let-7a-2:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 73 aactatacaacctcctacctcagcc 97
||||||||||||| |||||||||||
Sbjct: 38 aactatacaacctactacctcagcc 14
>33098_rno-mir-3596a:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 aactatacaacctcctacctcagcc 97
||||||||||||| |||||||||||
Sbjct: 67 aactatacaacctactacctcagcc 91
>34862_sko-let-7:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 70 ctcaactatacaacctcctacctca 94
|||||||||||||||| ||||||||
Sbjct: 45 ctcaactatacaacctactacctca 21
>34958_isc-let-7:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 70 ctcaactatacaacctcctacctca 94
|||||||||||||||| ||||||||
Sbjct: 45 ctcaactatacaacctactacctca 21
>38593_ppc-let-7:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 73 aactatacaacctcctacctcagc 96
||||||||||||| ||||||||||
Sbjct: 38 aactatacaacctactacctcagc 15
