miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27480_age-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>27589_sla-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>28172_mne-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>28260_ggo-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>30044_ppa-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>30753_ppy-mir-16:mirbase
Length = 89
Score = 165 bits (83), Expect = 7e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttg 87
|||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttg 87
>27541_lla-mir-16:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggcgctaagattctaaaattatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttggc 89
|||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttggc 89
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 6 cagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaa 65
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 cagtgccttagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaa 60
Query: 66 ctgtgctgctgaagtaagg 84
|||||||||||||||||||
Sbjct: 61 ctgtgctgctgaagtaagg 79
>27334_mdo-mir-16:mirbase
Length = 90
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
|||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct: 1 gtcaacagtgccttagcagcacgtaaatattggcgttaagattttaaaagtatctccagt 60
Query: 61 attaactgtgctgctgaagtaaggttggc 89
|||||||||||||||||||||||||||||
Sbjct: 61 attaactgtgctgctgaagtaaggttggc 89
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
|||||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct: 3 gtcagcggtgccttagcagcacgtaaatattggcgttaagattctgaaattacctccagt 62
Query: 61 attaactgtgctgctgaagtaaggttggc 89
||| |||||||||||||||||||||||||
Sbjct: 63 attgactgtgctgctgaagtaaggttggc 91
>31428_oan-mir-16a:mirbase
Length = 132
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctccagt 60
||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct: 16 gtcagcagtaccttagcagcacgtaaatattggcgttaagactctaaaagtatctccagt 75
Query: 61 attaactgtgctgctgaagtaagg 84
||| ||||||||||||||||||||
Sbjct: 76 attgactgtgctgctgaagtaagg 99
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgctg 73
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 74 ctgaa 78
|||||
Sbjct: 61 ctgaa 65
>31394_lca-mir-16:mirbase
Length = 74
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctc-cag 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gtcagcagtgccttagcagcacgtaaatattggtgttaagattctaaaattatctctaag 60
Query: 60 tattaactgtgc 71
||||||||||||
Sbjct: 61 tattaactgtgc 72
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgctg 73
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgttaagattctaaaattatctccagtattaactgtgctg 60
Query: 74 ctg 76
|||
Sbjct: 61 ctg 63
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 105 bits (53), Expect = 5e-24
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 13 ttagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgct 72
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
Query: 73 gctgaagtaagg 84
||||||||||||
Sbjct: 68 gctgaagtaagg 79
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/71 (92%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaagattctaaaattatctccagtattaactgtgctg 73
|||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
Query: 74 ctgaagtaagg 84
|||||||||||
Sbjct: 72 ctgaagtaagg 82
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 3 cagcagtgccttagcagcacgtaaatattggtgttaa 39
||||||| | |||||||||||||||||||||||||||
Sbjct: 3 cagcagtcctttagcagcacgtaaatattggtgttaa 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 tattaactgtgctgctgaagtaaggttggc 89
|||||||||||||||| ||||||||||||
Sbjct: 51 tattaactgtgctgctagagtaaggttggc 80
>34206_dre-mir-16a:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ttagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||
Sbjct: 12 ttagcagcacgtaaatattggtgt 35
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattggtgt 39
>31429_oan-mir-16b:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 21 tagcagcacgtaaatattggtgt 43
>34547_fru-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaag 40
|||||||||||||||||||| ||||||
Sbjct: 13 tagcagcacgtaaatattggagttaag 39
>34695_tni-mir-16:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaag 40
|||||||||||||||||||| ||||||
Sbjct: 1 tagcagcacgtaaatattggagttaag 27
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 ttagcagcacgtaaatattgg 33
|||||||||||||||||||||
Sbjct: 13 ttagcagcacgtaaatattgg 33
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>26947_eca-mir-16:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattgg 28
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>32659_rno-mir-16:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>33131_bta-mir-16b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 8 tagcagcacgtaaatattgg 27
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattgg 33
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
