miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32659_rno-mir-16:mirbase
Length = 95
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 1 catacttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacac 60
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 catacttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacac 60
Query: 61 caatattattgtgctgctttagcgtgacaggga 93
|||||||||||||||||||||| ||||||||||
Sbjct: 61 caatattattgtgctgctttagtgtgacaggga 93
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 5 cttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaat 64
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5 cttgttccactctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaat 64
Query: 65 attattgtgctgctttagcgtgacaggga 93
|||||||||||||||||| ||||||||||
Sbjct: 65 attattgtgctgctttagtgtgacaggga 93
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 145 bits (73), Expect = 6e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 10 tccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 69
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
Query: 70 tgtgctgctttagcgtg 86
|||||||||||||||||
Sbjct: 61 tgtgctgctttagcgtg 77
>26947_eca-mir-16:mirbase
Length = 81
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
Query: 68 attgtgctgctttagcgtg 86
|||||||||||||||||||
Sbjct: 61 attgtgctgctttagcgtg 79
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctg 76
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 77 cttta 81
|||||
Sbjct: 61 cttta 65
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatatt 60
Query: 68 attgtgctgctttagcgtgac 88
| ||||||||||||| |||||
Sbjct: 61 actgtgctgctttagtgtgac 81
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 111 bits (56), Expect = 9e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 3 tacttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacacca 62
|||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 3 tacttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaacccca 62
Query: 63 atattattgtgctgctttagcgtg 86
||||||||||||||||| ||||||
Sbjct: 63 atattattgtgctgcttaagcgtg 86
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctg 76
|||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||
Sbjct: 9 tagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtgctg 68
Query: 77 ctttagcgtgac 88
|||||| |||||
Sbjct: 69 ctttagtgtgac 80
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattgg-cgtagtaaaataaatattaaacaccaatat 66
||||| || |||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatat 60
Query: 67 tattgtgctgctttagcgtgac 88
|| ||||||||||||| |||||
Sbjct: 61 tactgtgctgctttagtgtgac 82
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 97.6 bits (49), Expect = 1e-21
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1 gttccactctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatatt 60
Query: 68 attgtgctgctttagcgtgac 88
| |||||||||| || |||||
Sbjct: 61 actgtgctgcttcagtgtgac 81
>31429_oan-mir-16b:mirbase
Length = 101
Score = 79.8 bits (40), Expect = 3e-16
Identities = 80/93 (86%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 1 catacttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacac 60
||||||| || |||| |||||||||||||||||||| ||||| || | |||||| |
Sbjct: 5 catacttattacgctctagcagcacgtaaatattggtgtagtgaagtc----ttaaaccc 60
Query: 61 caatattattgtgctgctttagcgtgacaggga 93
||||||||||||||||||||||||||| |||||
Sbjct: 61 caatattattgtgctgctttagcgtgataggga 93
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 5e-09
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatatt 67
||||||| |||||||||||||||||||| || || ||| ||| || ||| ||||||||
Sbjct: 2 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 60
Query: 68 attgtgctgctt 79
||||||||||||
Sbjct: 61 attgtgctgctt 72
>34207_dre-mir-16b:mirbase
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctgtagcagcacgtaaatattgg 36
||||||||||||||||||||||||
Sbjct: 35 gctgtagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gctgtagcagcacgtaaatattgg 36
||||||||||||||||||||||||
Sbjct: 9 gctgtagcagcacgtaaatattgg 32
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgt 23
>27334_mdo-mir-16:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27480_age-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27589_sla-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28172_mne-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28260_ggo-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30044_ppa-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>30753_ppy-mir-16:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcgt 36
>31428_oan-mir-16a:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattggcgt 51
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattggcgt 38
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcgt 39
|||||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattggcgt 31
>27541_lla-mir-16:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggcg 38
||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggcg 35
>25429_pma-mir-16:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 gtagcagcacgtaaatattgg 36
|||||||||||||||||||||
Sbjct: 9 gtagcagcacgtaaatattgg 29
>34206_dre-mir-16a:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 cgctgtagcagcacgtaaatattgg 36
|||| ||||||||||||||||||||
Sbjct: 8 cgctttagcagcacgtaaatattgg 32
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
