miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31432_oan-mir-18:mirbase
Length = 130
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 22 cttgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaat 81
Query: 61 gctccttctggcaca 75
|||||||||||||||
Sbjct: 82 gctccttctggcaca 96
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaat 63
Query: 61 gctccttctggcaca 75
|| ||||||||||||
Sbjct: 64 gccccttctggcaca 78
>27657_mml-mir-18b:mirbase
Length = 71
Score = 125 bits (63), Expect = 5e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 tccttctggca 73
||||||||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 125 bits (63), Expect = 5e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 tccttctggca 73
||||||||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 125 bits (63), Expect = 5e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 tccttctggca 73
||||||||||
Sbjct: 61 cccttctggca 71
>25900_gga-mir-18b:mirbase
Length = 84
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 8 cttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaat 67
Query: 61 gctccttctggcaca 75
|||||||||||||||
Sbjct: 68 gctccttctggcaca 82
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 63 tccttctggc 72
|| ||||||
Sbjct: 61 cccatctggc 70
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaat 63
Query: 61 gctccttctggcaca 75
|| |||||| |||||
Sbjct: 64 gccccttctcgcaca 78
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 105 bits (53), Expect = 4e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 3 tgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
Query: 63 tccttctggcaca 75
||||| ||||||
Sbjct: 63 cccttccggcaca 75
>26951_eca-mir-18b:mirbase
Length = 59
Score = 101 bits (51), Expect = 7e-23
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgc 62
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 55
>25656_xla-mir-18:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 2 cttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaat 61
Query: 61 gctccttctggcaca 75
||||||| |||||||
Sbjct: 62 gctccttttggcaca 76
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 85.7 bits (43), Expect = 4e-18
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 2 cttgtgttaaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaat 61
Query: 61 gctccttctggcaca 75
||||||| |||||||
Sbjct: 62 gctccttttggcaca 76
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ctggca 73
||||||
Sbjct: 74 ctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ctggca 73
||||||
Sbjct: 74 ctggca 79
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ctggca 73
||||||
Sbjct: 74 ctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 7 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 66
Query: 68 ctggca 73
||||||
Sbjct: 67 ctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 68 ctggca 73
||||||
Sbjct: 66 ctggca 71
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 68 ctggca 73
||||||
Sbjct: 74 ctggca 79
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 75.8 bits (38), Expect = 4e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
Query: 68 ct 69
||
Sbjct: 71 ct 72
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 68 ctggca 73
||||||
Sbjct: 77 ctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || || |||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 68 ctggca 73
||||||
Sbjct: 77 ctggca 82
>26950_eca-mir-18a:mirbase
Length = 61
Score = 73.8 bits (37), Expect = 1e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
||||||||||||||||||| |||||||| || | || |||||||||||||| ||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 68 c 68
|
Sbjct: 61 c 61
>34211_dre-mir-18a:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 1e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 2 ttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatg 61
||||| ||||||||||||||||||| |||||||| || || | |||||||||||| ||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
Query: 62 ctccttctggcac 74
|||||||||||||
Sbjct: 65 ctccttctggcac 77
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagtga 33
|||||||||||||||||||||||||||||||||
Sbjct: 94 cttgtgttaaggtgcatctagtgcagttagtga 126
>34550_fru-mir-18:mirbase
Length = 76
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 ttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatg 61
||||| ||||||||||||||||||| ||||||| || || | |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 62 ctccttctggca 73
||||||||||||
Sbjct: 61 ctccttctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 2 ttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatg 61
||||| ||||||||||||||||||| ||||||| || || | |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 62 ctccttctggca 73
||||||||||||
Sbjct: 61 ctccttctggca 72
>25433_pma-mir-18a:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cttgtgttaaggtgcatctagtgcagttagt 31
|||||| ||||||||||||||||||| ||||
Sbjct: 11 cttgtgctaaggtgcatctagtgcagatagt 41
>34212_dre-mir-18b:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
|||||||||| |||||||| ||||||| || || | |||||||||||| ||| ||||
Sbjct: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
Query: 68 ctggca 73
||||||
Sbjct: 73 ctggca 78
>34213_dre-mir-18c:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
|||||||||||| ||| ||||||||||| || || ||||||||| ||| ||| |||||
Sbjct: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
Query: 68 ctggca 73
|||||
Sbjct: 71 ttggca 76
