miRNEST 2.0, an integrative microRNA resource :: BLAST
>26973_eca-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>27679_mml-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>32686_rno-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 40
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 39 atttgaaatcggttatgatgtaggggga 12
>33161_bta-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| ||||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggga 88
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggg 87
||||||||||| |||||||||||||||
Sbjct: 61 atttgaaatcggttatgatgtaggggg 87
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtctgtttttgtctagcacc 60
Query: 61 atttgaaatcgattatgatgtaggggga 88
||||||||||| |||||| |||||||||
Sbjct: 61 atttgaaatcggttatgacgtaggggga 88
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 133 bits (67), Expect = 2e-32
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 atctcttacacaggctgaccgatttctcctggtgttcagagtct--gtttttgtctagca 58
|||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 9 atctcttacacaggctgaccgatttctcttggtgttcagagtctcagttcttgtctagca 68
Query: 59 ccatttgaaatcgattatgatgtaggggga 88
||||||||||||| ||||||||||||||||
Sbjct: 69 ccatttgaaatcggttatgatgtaggggga 98
>25914_gga-mir-29c:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 2 tctcttacacaggctgaccgatttctcctggtgttcagagtct--gtttttgtctagcac 59
||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 1 tctcttacacaggctgaccgatttctcttggtgttcagagtctcagtttctgtctagcac 60
Query: 60 catttgaaatcgattatgatgtaggggga 88
|||||||||||| ||||||||||||||||
Sbjct: 61 catttgaaatcggttatgatgtaggggga 89
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 18 accgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcg 54
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 18 accgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcg 54
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 103 bits (52), Expect = 2e-23
Identities = 67/71 (94%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtct--gtttttgtctagcaccatttgaaatcgat 73
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 1 tgaccgatttctcttggtgttcagagtctcagtttttgtctagcaccatttgaaatcggt 60
Query: 74 tatgatgtagg 84
|||||||||||
Sbjct: 61 tatgatgtagg 71
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcgatta 75
|||| ||||||| |||||||||||||||| || || |||||||||||||||||||| |||
Sbjct: 15 tgactgatttcttctggtgttcagagtcttttgttttctagcaccatttgaaatcggtta 74
Query: 76 t 76
|
Sbjct: 75 t 75
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 61.9 bits (31), Expect = 7e-11
Identities = 69/81 (85%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 5 cttacacaggctgaccgatttctcctggtgttcagagtct---gtttttgtctagcacca 61
|||||||||| |||||||| |||| |||||||||||| || || || ||||||||||
Sbjct: 4 cttacacaggatgaccgatctctcttggtgttcagaggctcaggtcttcatctagcacca 63
Query: 62 tttgaaatcgattatgatgta 82
|||||||||| |||| |||||
Sbjct: 64 tttgaaatcggttataatgta 84
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 50/58 (86%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtctgtt--tttgtctagcaccatttgaaatcg 71
|||||||||||| ||||||||||||||| || | ||||||||||||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtcttttggggtttctagcaccatttgaaatcg 62
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 50/58 (86%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtctgtttttg--tctagcaccatttgaaatcg 71
|||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtccaattctgtttctagcaccatttgaaatcg 62
>25912_gga-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>26419_tgu-mir-29b-1:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 36 ttgtctagcaccatttgaaatc 57
>26649_cfa-mir-29b-1:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 38 ttgtctagcaccatttgaaatc 59
>26971_eca-mir-29b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>27494_age-mir-29b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>27554_lla-mir-29b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>27677_mml-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>28276_ggo-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>28388_hsa-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>30063_ppa-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>30173_ptr-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>30778_ppy-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>31803_mmu-mir-29b-1:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>32684_rno-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>33086_rno-mir-3587:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 63 ttgtctagcaccatttgaaatc 42
>33159_bta-mir-29b-1:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>33936_ssc-mir-29b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 46 ttgtctagcaccatttgaaatc 67
>34571_fru-mir-29b-1:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 45 ttgtctagcaccatttgaaatc 66
>38735_cte-mir-29a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatc 70
|||||||||||||||||||||
Sbjct: 57 tgtctagcaccatttgaaatc 77
>25911_gga-mir-29a:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 39 tctagcaccatttgaaatcggttat 63
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>27355_mdo-mir-29b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatc 70
|||||||||||||||||||||
Sbjct: 51 tgtctagcaccatttgaaatc 71
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 68 tctagcaccatttgaaatcggttat 92
>31448_oan-mir-29b-1:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatc 70
|||||||||||||||||||||
Sbjct: 72 tgtctagcaccatttgaaatc 92
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 79 tctagcaccatttgaaatcggttat 103
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 82 tctagcaccatttgaaatcggttat 106
>34717_tni-mir-29a-2:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcgattat 76
|||||||||||||||||||| ||||
Sbjct: 58 tctagcaccatttgaaatcggttat 82
>25451_pma-mir-29a:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gtctagcaccatttgaaatc 70
||||||||||||||||||||
Sbjct: 47 gtctagcaccatttgaaatc 66
>34246_dre-mir-29b-3:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gtctagcaccatttgaaatc 70
||||||||||||||||||||
Sbjct: 52 gtctagcaccatttgaaatc 71
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcg 71
||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcg 62
>34718_tni-mir-29b-1:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gtctagcaccatttgaaatc 70
||||||||||||||||||||
Sbjct: 47 gtctagcaccatttgaaatc 66
>34868_sko-mir-29b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 gtctagcaccatttgaaatc 70
||||||||||||||||||||
Sbjct: 58 gtctagcaccatttgaaatc 77
>35053_api-mir-29:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaa 68
||||||||||||||||||||
Sbjct: 40 ttgtctagcaccatttgaaa 59
