miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33165_bta-mir-30b:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccaagttttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaagttttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctggga 60
Query: 61 ggtggatgtttacttcagctgacttgga 88
||||||||||||||||||||||||||||
Sbjct: 61 ggtggatgtttacttcagctgacttgga 88
>27682_mml-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>28191_mne-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>28392_hsa-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>30067_ppa-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>30178_ptr-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>30783_ppy-mir-30b:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>28280_ggo-mir-30b:mirbase
Length = 88
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 10 cagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgt 69
||||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 10 cagttcatgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgt 69
Query: 70 ttacttcagctgacttgga 88
|||||||||||||||||||
Sbjct: 70 ttacttcagctgacttgga 88
>27495_age-mir-30b:mirbase
Length = 88
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>27555_lla-mir-30b:mirbase
Length = 88
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||
Sbjct: 7 tttcagttcatgtaaacatcctacactcagctgtaatacatggattggctgagaggtgga 66
Query: 67 tgtttacttcagctgacttgga 88
||||||||||||||||||||||
Sbjct: 67 tgtttacttcagctgacttgga 88
>32688_rno-mir-30b:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||| | ||| |||| |||||||| |||||
Sbjct: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
Query: 67 tgtttacttcagctgacttgga 88
||||||| ||||||| ||||||
Sbjct: 66 tgtttacgtcagctgtcttgga 87
>32689_rno-mir-30b:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||| | ||| |||| |||||||| |||||
Sbjct: 6 tttcagttcatgtaaacatcctacactcagctgtcatacatgagttggctgggatgtgga 65
Query: 67 tgtttacttcagctgacttgga 88
||||||| ||||||| ||||||
Sbjct: 66 tgtttacgtcagctgtcttgga 87
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 67 tgtttacttcagctga 82
||||||||||||||||
Sbjct: 61 tgtttacttcagctga 76
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 103 bits (52), Expect = 2e-23
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
||||||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 1 tttcagttcgtgtaaacatcctacactcagctgtaatacatggattggctgggaggtgga 60
Query: 67 tgtttacttcagctga 82
||||||||||||||||
Sbjct: 61 tgtttacttcagctga 76
>31807_mmu-mir-30b:mirbase
Length = 96
Score = 99.6 bits (50), Expect = 3e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 7 tttcagttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtgga 66
|||||||||||||||||||||||||||||||||| | ||| | || |||||||| |||||
Sbjct: 11 tttcagttcatgtaaacatcctacactcagctgtcatacatgcgttggctgggatgtgga 70
Query: 67 tgtttacttcagctgacttgga 88
||||||| ||||||| ||||||
Sbjct: 71 tgtttacgtcagctgtcttgga 92
>31451_oan-mir-30b:mirbase
Length = 111
Score = 75.8 bits (38), Expect = 5e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 11 agttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtt 70
|||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||
Sbjct: 23 agttcatgtaaacatcctacactcagctgtgacccacccagcggctgggagggggatgtt 82
Query: 71 tacttcagctgacttgga 88
| ||||| | ||||||||
Sbjct: 83 tgcttcaaccgacttgga 100
>26654_cfa-mir-30b:mirbase
Length = 60
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtttacttc 76
||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtagtacatggattggctgggaggtggatgtttacttc 60
>25917_gga-mir-30b:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 11 agttcatgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtt 70
||||| |||||||||||||||||||||| ||||| | ||||||| ||||||||||
Sbjct: 10 agttcctgtaaacatcctacactcagctataacaagtggtagggctggggggtggatgtt 69
Query: 71 tacttcagctgacttgga 88
||||||| ||||||||||
Sbjct: 70 tacttcaactgacttgga 87
>26975_eca-mir-30b:mirbase
Length = 58
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtttact 74
||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtactacatggattggctgggaggtggatgtttact 58
>34248_dre-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34573_fru-mir-30b:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>34720_tni-mir-30b:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactcagctgt 40
||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactcagctgt 30
>25733_xtr-mir-30b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 atgtaaacatcctacactcagct 38
|||||||||||||||||||||||
Sbjct: 11 atgtaaacatcctacactcagct 33
