miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 7 cagatactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggct 66
Query: 67 gtttactctctctgcctt 84
||||||||||||||||||
Sbjct: 67 gtttactctctctgcctt 84
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 3 cagatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggct 62
Query: 67 gtttactctctctgcctt 84
||||||||||||||||||
Sbjct: 63 gtttactctctctgcctt 80
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
|||||| |||||||| |||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 7 cagatattgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggct 66
Query: 67 gtttactctctctgcctt 84
||||||||||||||||||
Sbjct: 67 gtttactctctctgcctt 84
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 111 bits (56), Expect = 8e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactctctct 79
||||||||||||
Sbjct: 61 tttactctctct 72
>27556_lla-mir-30c:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctg 67
|||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 agatactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctg 60
Query: 68 tttactct 75
||||||||
Sbjct: 61 tttactct 68
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 74 ctctctgcctt 84
|||||||||||
Sbjct: 61 ctctctgcctt 71
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 74 ctctctgcctt 84
|||||||||||
Sbjct: 61 ctctctgcctt 71
>31452_oan-mir-30c:mirbase
Length = 122
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 11 tactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgttt 70
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 28 tactgtaaacatcctacactctcagctgtagat-gtgagaaagctgggagaaggctgttt 86
Query: 71 actctctctgcctt 84
||||||||||||||
Sbjct: 87 actctctctgcctt 100
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 91.7 bits (46), Expect = 7e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 tactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgttt 70
||||||||||| |||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
Query: 71 actctc 76
||||||
Sbjct: 64 actctc 69
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 7e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 74 ct 75
||
Sbjct: 61 ct 62
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 77.8 bits (39), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 7 cagatactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggct 66
||||||||||||||| |||||||||||||||||| | | | ||||||||| |||||||
Sbjct: 7 cagatactgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaaggct 64
Query: 67 gtttactctctctg 80
||||||||||||||
Sbjct: 65 gtttactctctctg 78
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgc 41
||||||||||||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtgc 37
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctg 38
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| ||| | || |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 74 c 74
|
Sbjct: 76 c 76
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtg 42
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>33167_bta-mir-30c:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtg 52
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>34249_dre-mir-30c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctg 38
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25462_pma-mir-30g:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||| ||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtg 38
