miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31812_mmu-mir-31:mirbase
Length = 106
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 tcctgtaacttggaactggagaggaggcaagatgctggcatagctgttgaactgcgaacc 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4 tcctgtaactcggaactggagaggaggcaagatgctggcatagctgttgaactgagaacc 63
Query: 61 tgctatgccaacatattgccatct 84
||||||||||||||||||||||||
Sbjct: 64 tgctatgccaacatattgccatct 87
>32694_rno-mir-31:mirbase
Length = 106
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 tcctgtaacttggaactggagaggaggcaagatgctggcatagctgttgaactgcgaacc 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4 tcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgagaacc 63
Query: 61 tgctatgccaacatattgccatct 84
||||||||||||||||||||||||
Sbjct: 64 tgctatgccaacatattgccatct 87
>33042_rno-mir-3554:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 82/84 (97%)
Strand = Plus / Minus
Query: 1 tcctgtaacttggaactggagaggaggcaagatgctggcatagctgttgaactgcgaacc 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 109 tcctgaaacttggaactggagaggaggcaagatgctggcatagctgttgaactgagaacc 50
Query: 61 tgctatgccaacatattgccatct 84
||||||||||||||||||||||||
Sbjct: 49 tgctatgccaacatattgccatct 26
>27357_mdo-mir-31:mirbase
Length = 87
Score = 129 bits (65), Expect = 4e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3 ctggagaggaggcaagatgttggcatagctgttgaactgagaacctgctatgccaacata 62
Query: 76 ttgccatctctcttgtc 92
||||||||| |||||||
Sbjct: 63 ttgccatctttcttgtc 79
>26980_eca-mir-31:mirbase
Length = 67
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>27687_mml-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>28194_mne-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>28282_ggo-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>28397_hsa-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>30069_ppa-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>30183_ptr-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>30787_ppy-mir-31:mirbase
Length = 71
Score = 125 bits (63), Expect = 6e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatatt 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacatatt 60
Query: 78 gccatct 84
|||||||
Sbjct: 61 gccatct 67
>26659_cfa-mir-31:mirbase
Length = 59
Score = 109 bits (55), Expect = 4e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 25 aggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacatattgccatc 83
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 aggcaagatgctggcatagctgttgaactgagaacctgctatgccaacatattgccatc 59
>26429_tgu-mir-31:mirbase
Length = 109
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
Query: 76 ttgccatct 84
||| |||||
Sbjct: 76 ttgtcatct 84
>25922_gga-mir-31:mirbase
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
|||||| |||||||||||| ||||||||||||| | || |||||||||||||||||||
Sbjct: 16 ctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaacata 75
Query: 76 ttgccatct 84
||| |||||
Sbjct: 76 ttgtcatct 84
>31456_oan-mir-31:mirbase
Length = 136
Score = 73.8 bits (37), Expect = 2e-14
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgctggcatagctgttgaactgcgaacctgctatgccaacata 75
|||||||| |||||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct: 8 ctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccgacatg 67
Query: 76 ttgccatctctcttgtc 92
||| ||||| |||||||
Sbjct: 68 ttgtcatctttcttgtc 84
>25738_xtr-mir-31:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 gagaggaggcaagatgctggcatagctgttg 49
|||||||||||||||| ||||||||||||||
Sbjct: 11 gagaggaggcaagatgttggcatagctgttg 41
>39077_sme-mir-31b-3:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgctggcatagctg 46
||||||||||||||||||||||
Sbjct: 3 aggcaagatgctggcatagctg 24
>39076_sme-mir-31b-2:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgctggcatagctg 46
||||||||||||||||||||||
Sbjct: 3 aggcaagatgctggcatagctg 24
>39075_sme-mir-31b-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgctggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgctggcatagctg 35
>34869_sko-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ggaggcaagatgctggcatagctgtt 48
|||||||||||| |||||||||||||
Sbjct: 19 ggaggcaagatgttggcatagctgtt 44
>34252_dre-mir-31:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 62 gctatgccaacatattgccatctct 86
||||||||||||| |||||||||||
Sbjct: 27 gctatgccaacatcttgccatctct 3
