miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27557_lla-mir-34a:mirbase
Length = 111
Score = 188 bits (95), Expect = 6e-49
Identities = 104/107 (97%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaag 60
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
>27496_age-mir-34a:mirbase
Length = 111
Score = 180 bits (91), Expect = 1e-46
Identities = 103/107 (96%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgtgcaatagtgaag 60
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
>27604_sla-mir-34a:mirbase
Length = 111
Score = 180 bits (91), Expect = 1e-46
Identities = 103/107 (96%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 1 ggccggctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaag 60
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 174 bits (88), Expect = 8e-45
Identities = 100/104 (96%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaatagataag 60
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 172 bits (87), Expect = 3e-44
Identities = 103/107 (96%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 106
>28401_hsa-mir-34a:mirbase
Length = 110
Score = 172 bits (87), Expect = 3e-44
Identities = 103/107 (96%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 106
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 172 bits (87), Expect = 3e-44
Identities = 103/107 (96%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 106
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 172 bits (87), Expect = 3e-44
Identities = 103/107 (96%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 106
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 170 bits (86), Expect = 1e-43
Identities = 102/106 (96%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtgg 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtgg 105
>25925_gga-mir-34a:mirbase
Length = 109
Score = 157 bits (79), Expect = 2e-39
Identities = 97/103 (94%)
Strand = Plus / Plus
Query: 2 gccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcagg 61
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct: 1 gccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaagg 60
Query: 62 aagcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
|||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 61 aagcaatcagcaagtatactgccctagaagtgctacacattgt 103
>27691_mml-mir-34a:mirbase
Length = 110
Score = 157 bits (79), Expect = 2e-39
Identities = 101/107 (94%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctacacattgtggg 106
>28197_mne-mir-34a:mirbase
Length = 110
Score = 157 bits (79), Expect = 2e-39
Identities = 101/107 (94%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 1 ggccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagt-aag 59
Query: 61 gaagcaatcagcaagtatactgccctagaagtgctgcacgttgtggg 107
||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 60 gaagcaatcagcaagtatactgccctagaagtgctacacattgtggg 106
>32697_rno-mir-34a:mirbase
Length = 102
Score = 141 bits (71), Expect = 1e-34
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagc 65
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
Query: 66 aatcagcaagtatactgccctagaagtgctgcacgttgt 104
|||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 139 bits (70), Expect = 5e-34
Identities = 94/102 (92%)
Strand = Plus / Plus
Query: 3 ccagctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcagga 62
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 1 ccagctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaagga 60
Query: 63 agcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 agcaatcagcaagtatactgccctagaagtgctgcacattgt 102
>26663_cfa-mir-34a:mirbase
Length = 66
Score = 115 bits (58), Expect = 7e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 22 tggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcagcaagtatact 81
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
Query: 82 gcccta 87
||||||
Sbjct: 61 gcccta 66
>26432_tgu-mir-34a:mirbase
Length = 72
Score = 111 bits (56), Expect = 1e-25
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 12 agtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcag 71
|||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
Query: 72 caagtatactgc 83
||||||||||||
Sbjct: 61 caagtatactgc 72
>26984_eca-mir-34:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 22 tggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcagcaagtatact 81
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
Query: 82 gcc 84
|||
Sbjct: 61 gcc 63
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 89.7 bits (45), Expect = 4e-19
Identities = 81/93 (87%)
Strand = Plus / Plus
Query: 7 ctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagca 66
||||||||||||||||||||||||||||||||||||||||| | || | | ||||
Sbjct: 1 ctgtgagtgtttctttggcagtgtcttagctggttgttgtggcacgttatagaagtagca 60
Query: 67 atcagcaagtatactgccctagaagtgctgcac 99
|||||||| ||||||||||||||||| ||||||
Sbjct: 61 atcagcaaatatactgccctagaagttctgcac 93
>33948_ssc-mir-34a:mirbase
Length = 76
Score = 85.7 bits (43), Expect = 6e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 16 tttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagcaatcagcaag 75
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1 tttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-ag 59
Query: 76 tatactgccctagaa 90
|| |||||||||||
Sbjct: 60 catcctgccctagaa 74
>34253_dre-mir-34:mirbase
Length = 98
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagc 65
|||||||||| |||| |||||||||||||||||||||||||| | | | | | | |||||
Sbjct: 3 gctgtgagtggttctctggcagtgtcttagctggttgttgtgtggagtga-gaacgaagc 61
Query: 66 aatcagcaagtatactgcc 84
|||||||||||||||||||
Sbjct: 62 aatcagcaagtatactgcc 80
