miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27499_age-mir-93:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>27560_lla-mir-93:mirbase
Length = 80
Score = 131 bits (66), Expect = 8e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 4 ggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagccagc 63
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 4 ggggctccaaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagc 63
Query: 64 acttcccgagcccc 77
||||||||||||||
Sbjct: 64 acttcccgagcccc 77
>28288_ggo-mir-93:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>30075_ppa-mir-93:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>30192_ptr-mir-93:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>30798_ppy-mir-93:mirbase
Length = 80
Score = 129 bits (65), Expect = 3e-31
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>31822_mmu-mir-93:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 2 tgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcca 61
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct: 6 tgggggctccaaagtgctgttcgtgcaggtagtgtaattacctgacctactgctgagcta 65
Query: 62 gcacttcccgagcccc 77
||||||||||||||||
Sbjct: 66 gcacttcccgagcccc 81
>27362_mdo-mir-93:mirbase
Length = 89
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 3 gggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagccag 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 8 gggggctccaaagtgctgttcgtgcaggtagtgtgataacctgacctactgctgagctag 67
Query: 63 cacttcccgagcccc 77
||||||| |||||||
Sbjct: 68 cacttccagagcccc 82
>27607_sla-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>27698_mml-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>28199_mne-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattaaccgacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>28408_hsa-mir-93:mirbase
Length = 80
Score = 121 bits (61), Expect = 7e-29
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcc 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 ctgggggctccaaagtgctgttcgtgcaggtagtgtgattacccaacctactgctgagct 60
Query: 61 agcacttcccgagcccc 77
|||||||||||||||||
Sbjct: 61 agcacttcccgagcccc 77
>26669_cfa-mir-93:mirbase
Length = 61
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 11 caaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagccagcacttccc 70
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttccc 60
Query: 71 g 71
|
Sbjct: 61 g 61
>32703_rno-mir-93:mirbase
Length = 87
Score = 103 bits (52), Expect = 2e-23
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 2 tgggggctccaaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagcca 61
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct: 6 tgggggctccaaagtgctgttcgtgcaggtagtg-cattgcctgacctactgctgagcta 64
Query: 62 gcacttcccgagcccc 77
||||||||||||||||
Sbjct: 65 gcacttcccgagcccc 80
>26991_eca-mir-93:mirbase
Length = 59
Score = 101 bits (51), Expect = 7e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 11 caaagtgctgttcgtgcaggtagtgtgatcacctgacctactgctgagccagcacttcc 69
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1 caaagtgctgttcgtgcaggtagtgtgattacctgacctactgctgagctagcacttcc 59
>25750_xtr-mir-93a:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gggctccaaagtgctgttcgtgcaggtag 33
||||| |||||||||||||||||||||||
Sbjct: 3 gggcttcaaagtgctgttcgtgcaggtag 31
>34259_dre-mir-93:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aaagtgctgttcgtgcaggtagtgtg 37
||||||||||| ||||||||||||||
Sbjct: 11 aaagtgctgtttgtgcaggtagtgtg 36
>25751_xtr-mir-93b:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 aagtgctgttcgtgcaggtag 33
|||||||||||||||||||||
Sbjct: 5 aagtgctgttcgtgcaggtag 25
