miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26802_cfa-mir-330:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>27843_mml-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>27844_mml-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>28580_hsa-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>28581_hsa-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>30330_ptr-mir-330:mirbase
Length = 93
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>30948_ppy-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>30949_ppy-mir-330:mirbase
Length = 94
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
Query: 65 cacggcctgcagagaggcagcgctc 89
|||||||||||||||||||||||||
Sbjct: 65 cacggcctgcagagaggcagcgctc 89
>31997_mmu-mir-330:mirbase
Length = 98
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 9 ggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatccaacgagcaaagca 68
Query: 65 cacggcctgcagagaggcagcgctcagctc 94
|| |||||||||||||| ||||||| ||||
Sbjct: 69 cagggcctgcagagaggtagcgctctgctc 98
>32851_rno-mir-330:mirbase
Length = 97
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 5 ggcgatcactgcctctctgggcctgtgtcttaggctctgcaagatcaaccgagcaaagca 64
||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 8 ggcgatctctgcctctctgggcctgtgtcttaggctcttcaagatctaacgagcaaagca 67
Query: 65 cacggcctgcagagaggcagcgctcagctc 94
|| |||||||||||||| ||||||| ||||
Sbjct: 68 cagggcctgcagagaggtagcgctctgctc 97
>27126_eca-mir-330:mirbase
Length = 64
Score = 87.7 bits (44), Expect = 1e-18
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 18 tctctgggcctgtgtcttaggctctgc-aagatcaaccgagc-aaagcacacggcctgca 75
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 1 tctctgggcctgtgtcttaggctcttcaaagatcaaccgagcaaaagcacacggcctgca 60
Query: 76 gaga 79
||||
Sbjct: 61 gaga 64
