miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28584_hsa-mir-335:mirbase
Length = 94
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 62
Query: 61 tgctcctgacctcctctcatttgct 85
|||||||||||||||||||||||||
Sbjct: 63 tgctcctgacctcctctcatttgct 87
>30332_ptr-mir-335:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
Query: 61 tgctcctgacctcctctcatttgct 85
|||||||||||||||||||||||||
Sbjct: 62 tgctcctgacctcctctcatttgct 86
>30952_ppy-mir-335:mirbase
Length = 92
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
Query: 61 tgctcctgacctcctctcatttgct 85
|||||||||||||||||||||||||
Sbjct: 61 tgctcctgacctcctctcatttgct 85
>27847_mml-mir-335:mirbase
Length = 88
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 7 gcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcc 62
Query: 67 tgacctcctctcatttgct 85
|||||||||||||||||||
Sbjct: 63 tgacctcctctcatttgct 81
>34060_ssc-mir-335:mirbase
Length = 80
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
Query: 61 tgctcctgacctcctctca 79
|||||||||||||||||||
Sbjct: 62 tgctcctgacctcctctca 80
>27128_eca-mir-335:mirbase
Length = 75
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 7 gcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcc 62
Query: 67 tgacctcctctca 79
|||||||||||||
Sbjct: 63 tgacctcctctca 75
>32853_rno-mir-335:mirbase
Length = 98
Score = 131 bits (66), Expect = 9e-32
Identities = 82/87 (94%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 56
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 57 ttattgctcctgacctcctctcatttg 83
|||||||||||||||||||||||||||
Sbjct: 63 ttattgctcctgacctcctctcatttg 89
>32000_mmu-mir-335:mirbase
Length = 98
Score = 117 bits (59), Expect = 1e-27
Identities = 78/84 (92%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 56
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 57 ttattgctcctgacctcctctcat 80
||||||||||||||| ||||||||
Sbjct: 63 ttattgctcctgaccccctctcat 86
>32001_mmu-mir-335:mirbase
Length = 98
Score = 117 bits (59), Expect = 1e-27
Identities = 78/84 (92%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 56
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 57 ttattgctcctgacctcctctcat 80
||||||||||||||| ||||||||
Sbjct: 63 ttattgctcctgaccccctctcat 86
>26804_cfa-mir-335:mirbase
Length = 58
Score = 115 bits (58), Expect = 6e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 14 tcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcctgacc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcctgacc 58
