miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34061_ssc-mir-338:mirbase
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 8 ccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtg 60
Query: 68 attttgttgaagagggcag 86
|||||||||||||||||||
Sbjct: 61 attttgttgaagagggcag 79
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 121 bits (61), Expect = 9e-29
Identities = 73/77 (94%)
Strand = Plus / Minus
Query: 10 gtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgat 69
|||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 77 gtcctctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgat 18
Query: 70 tttgttgaagagggcag 86
|||||||||||||||||
Sbjct: 17 tttgttgaagagggcag 1
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 121 bits (61), Expect = 9e-29
Identities = 73/77 (94%)
Strand = Plus / Minus
Query: 10 gtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgat 69
|||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 77 gtcctctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgat 18
Query: 70 tttgttgaagagggcag 86
|||||||||||||||||
Sbjct: 17 tttgttgaagagggcag 1
>27131_eca-mir-338:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 18 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 18 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>30955_ppy-mir-338:mirbase
Length = 67
Score = 111 bits (56), Expect = 9e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>30956_ppy-mir-338:mirbase
Length = 67
Score = 111 bits (56), Expect = 9e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>32004_mmu-mir-338:mirbase
Length = 98
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 gcacgggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagc 60
|||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 8 gcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagc 66
Query: 61 atcagtgattttgttgaagagggcagctgcca 92
||||||||||||||||||||||||||||||||
Sbjct: 67 atcagtgattttgttgaagagggcagctgcca 98
>32005_mmu-mir-338:mirbase
Length = 98
Score = 111 bits (56), Expect = 9e-26
Identities = 84/92 (91%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 gcacgggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagc 60
|||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 8 gcacaggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagc 66
Query: 61 atcagtgattttgttgaagagggcagctgcca 92
||||||||||||||||||||||||||||||||
Sbjct: 67 atcagtgattttgttgaagagggcagctgcca 98
>26805_cfa-mir-338:mirbase
Length = 59
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 19 aacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttga 77
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttga 59
>33022_rno-mir-3065:mirbase
Length = 103
Score = 109 bits (55), Expect = 3e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 6 ggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcag 65
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 91 ggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcag 33
Query: 66 tgattttgttgaagagggcagctgcca 92
|||||||||||||||||||||||||||
Sbjct: 32 tgattttgttgaagagggcagctgcca 6
>33023_rno-mir-3065:mirbase
Length = 103
Score = 109 bits (55), Expect = 3e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 6 ggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcag 65
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 91 ggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcag 33
Query: 66 tgattttgttgaagagggcagctgcca 92
|||||||||||||||||||||||||||
Sbjct: 32 tgattttgttgaagagggcagctgcca 6
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 6 ggccgtcctccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcag 65
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 84 ggccgtcctccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcag 26
Query: 66 tgattttgttgaagagggcagctgc 90
|||||||||||||||||||||||||
Sbjct: 25 tgattttgttgaagagggcagctgc 1
>28587_hsa-mir-338:mirbase
Length = 67
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>28588_hsa-mir-338:mirbase
Length = 67
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>30334_ptr-mir-338:mirbase
Length = 66
Score = 101 bits (51), Expect = 8e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
Query: 77 aag 79
|||
Sbjct: 64 aag 66
>27850_mml-mir-338:mirbase
Length = 67
Score = 95.6 bits (48), Expect = 5e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>27851_mml-mir-338:mirbase
Length = 67
Score = 95.6 bits (48), Expect = 5e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttgttg 63
Query: 77 aaga 80
||||
Sbjct: 64 aaga 67
>27442_mdo-mir-338:mirbase
Length = 89
Score = 81.8 bits (41), Expect = 8e-17
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 6 ggccgtcctccccaacaatatcctggtgctgagtgat-gacacacgca-actccagcatc 63
|||| |||||||||||||||||||| |||||||||| | |||| | | |||||||||||
Sbjct: 1 ggccttcctccccaacaatatcctgatgctgagtgagcggcacatggagactccagcatc 60
Query: 64 agtgattttgttgaagagggcagctgcca 92
|||||||||||||||||||| |||||||
Sbjct: 61 agtgattttgttgaagagggtggctgcca 89
>32856_rno-mir-338:mirbase
Length = 66
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 tccccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttg 73
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tccccaacaatatcctggtgctgagtgggtgcaca-gtgactccagcatcagtgattttg 59
Query: 74 ttgaaga 80
|||||||
Sbjct: 60 ttgaaga 66
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||
Sbjct: 68 aactccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||
Sbjct: 68 aactccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aactccagcatcagtgattttgttg 76
|||||||||||||||||||||||||
Sbjct: 49 aactccagcatcagtgattttgttg 73
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actccagcatcagtgattttgttg 76
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 actccagcatcagtgattttgttg 76
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ctccagcatcagtgattttgttg 76
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ctccagcatcagtgattttgttg 76
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ctccagcatcagtgattttgttg 76
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 ctccagcatcagtgattttgttg 76
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
