miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34062_ssc-mir-339:mirbase
Length = 80
Score = 87.7 bits (44), Expect = 1e-18
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 gcagccgctgtccctgtcctccaggagctcacttgg-tccggccgtgcgctcctcgaggc 62
|||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct: 1 gcagccgccgtccctgtcctccaggagctcacttaccttgggccgtgagctcctcgaggc 60
Query: 63 cagagcccgtgtctgc 78
||||||||||||||||
Sbjct: 61 cagagcccgtgtctgc 76
>34063_ssc-mir-339:mirbase
Length = 80
Score = 87.7 bits (44), Expect = 1e-18
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 gcagccgctgtccctgtcctccaggagctcacttgg-tccggccgtgcgctcctcgaggc 62
|||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct: 1 gcagccgccgtccctgtcctccaggagctcacttaccttgggccgtgagctcctcgaggc 60
Query: 63 cagagcccgtgtctgc 78
||||||||||||||||
Sbjct: 61 cagagcccgtgtctgc 76
>27852_mml-mir-339:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>27853_mml-mir-339:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>28589_hsa-mir-339:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>28590_hsa-mir-339:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>30335_ptr-mir-339:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>30957_ppy-mir-339:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggggcagccgctgtccctgtcctccaggagctcac 35
||||| |||||| ||||||||||||||||||||||
Sbjct: 2 ggggcggccgctctccctgtcctccaggagctcac 36
>32857_rno-mir-339:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 gtccctgtcctccaggagctcac 35
|||||||||||||||||||||||
Sbjct: 15 gtccctgtcctccaggagctcac 37
>32858_rno-mir-339:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 gtccctgtcctccaggagctcac 35
|||||||||||||||||||||||
Sbjct: 15 gtccctgtcctccaggagctcac 37
>32006_mmu-mir-339:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tccctgtcctccaggagctcac 35
||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcac 37
>32007_mmu-mir-339:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tccctgtcctccaggagctcac 35
||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcac 37
>34158_ssc-mir-4334:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 gtccctgtcctccaggagctc 33
|||||||||||||||||||||
Sbjct: 40 gtccctgtcctccaggagctc 60
>34159_ssc-mir-4334:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 gtccctgtcctccaggagctc 33
|||||||||||||||||||||
Sbjct: 40 gtccctgtcctccaggagctc 60
>33328_bta-mir-339b:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tccctgtcctccaggagctc 33
||||||||||||||||||||
Sbjct: 1 tccctgtcctccaggagctc 20
