miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28591_hsa-mir-340:mirbase
Length = 95
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>30336_ptr-mir-340:mirbase
Length = 94
Score = 178 bits (90), Expect = 5e-46
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctt 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctt 94
>27854_mml-mir-340:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgttgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>30958_ppy-mir-340:mirbase
Length = 95
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtatctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtctcagttactttatagccatacctggtatctta 95
>32008_mmu-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>32009_mmu-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4 ttgtacttggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 63
Query: 61 gtctcagttactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctta 98
>32859_rno-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 9 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
Query: 69 tactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||
Sbjct: 72 tactttatagccatacctggtatctta 98
>32860_rno-mir-340:mirbase
Length = 98
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 9 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagt 71
Query: 69 tactttatagccatacctggtatctta 95
|||||||||||||||||||||||||||
Sbjct: 72 tactttatagccatacctggtatctta 98
>34064_ssc-mir-340:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 4 tacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtc 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatccgtc 60
Query: 64 tcagttactttatagccata 83
||||||||||||||||||||
Sbjct: 61 tcagttactttatagccata 80
>26806_cfa-mir-340:mirbase
Length = 92
Score = 139 bits (70), Expect = 4e-34
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtcgtttgtgggatcc 60
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ttgtacctgatgcgattataaagcaatgagactgattgtcatgtgtcggttgtgggatcc 60
Query: 61 gtctcagttactttatagccatacctggta 90
|||||||||||||||||||| | |||||||
Sbjct: 61 gtctcagttactttatagccgtgcctggta 90
>27133_eca-mir-340:mirbase
Length = 67
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 16 ttataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagttacttta 75
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 76 tagcc 80
|||||
Sbjct: 63 tagcc 67
>27134_eca-mir-340:mirbase
Length = 67
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 16 ttataaagcaatgagactgattgtcatgtgtcgtttgtgggatccgtctcagttacttta 75
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3 ttataaagcaatgagactgattgtcatgtgtcgcttgtgggatccgtctcagttacttta 62
Query: 76 tagcc 80
|||||
Sbjct: 63 tagcc 67
