miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33332_bta-mir-345:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaatatc 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatatc 91
>34066_ssc-mir-345:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 6 aacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagg 60
Query: 66 ggtctggaggcctgggtttg 85
||||||||||||||||||||
Sbjct: 61 ggtctggaggcctgggtttg 80
>34067_ssc-mir-345:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 6 aacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagg 60
Query: 66 ggtctggaggcctgggtttg 85
||||||||||||||||||||
Sbjct: 61 ggtctggaggcctgggtttg 80
>27137_eca-mir-345:mirbase
Length = 96
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaatatc 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatatc 91
>27138_eca-mir-345:mirbase
Length = 96
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1 acccaaccccaggtctgctgactcctagtccagtgctcgtgatggctagtgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaatatc 91
|||||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaatatc 91
>28594_hsa-mir-345:mirbase
Length = 98
Score = 143 bits (72), Expect = 2e-35
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctga 59
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
Query: 60 actaggggtctggaggcctgggtttgaatatc 91
|| |||||||||||||||||||||||||||||
Sbjct: 61 acgaggggtctggaggcctgggtttgaatatc 92
>30961_ppy-mir-345:mirbase
Length = 98
Score = 143 bits (72), Expect = 2e-35
Identities = 88/92 (95%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 acccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctga 59
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1 acccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctga 60
Query: 60 actaggggtctggaggcctgggtttgaatatc 91
|| |||||||||||||||||||||||||||||
Sbjct: 61 acgaggggtctggaggcctgggtttgaatatc 92
>30338_ptr-mir-345:mirbase
Length = 97
Score = 141 bits (71), Expect = 1e-34
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 2 cccaaaccc-aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cccaaaccctaggtctgctgactcctagtccagggctcgtgatggctggtgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaatatc 91
| |||||||||||||||||||||||||||||
Sbjct: 61 cgaggggtctggaggcctgggtttgaatatc 91
>32026_mmu-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>32027_mmu-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>32872_rno-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>32873_rno-mir-345:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>27857_mml-mir-345:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 70
||||| |||||||||||||| || ||| ||| ||||||||||||||||||| |||| |||
Sbjct: 8 aggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacgagggttct 67
Query: 71 ggaggcctgggtttgaatatc 91
|||||||||||||||||||||
Sbjct: 68 ggaggcctgggtttgaatatc 88
>26808_cfa-mir-345:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 16 tgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtctggagg 75
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctgactcttagtccagtgctcgtgatggctggtgggccctgaactaggggtctggagg 60
>28631_hsa-mir-378i:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 ctgactcctagtccagtgct 37
||||||||||||||||||||
Sbjct: 23 ctgactcctagtccagtgct 4
