miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34068_ssc-mir-361:mirbase
Length = 80
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
Query: 61 tgatttgcttc 71
|||||||||||
Sbjct: 61 tgatttgcttc 71
>34069_ssc-mir-361:mirbase
Length = 80
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
Query: 61 tgatttgcttc 71
|||||||||||
Sbjct: 61 tgatttgcttc 71
>27859_mml-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>27860_mml-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>28596_hsa-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>28597_hsa-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>30963_ppy-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>30964_ppy-mir-361:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgcttc 71
||||||||||||
Sbjct: 61 ctgatttgcttc 72
>26811_cfa-mir-361:mirbase
Length = 63
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 6 ttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctgatt 65
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatcagaatctccaggggtacttaaaatttgaaaaagtcccccaggtgtgattctgatt 60
Query: 66 tgc 68
|||
Sbjct: 61 tgc 63
>27141_eca-mir-361:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattc 60
Query: 61 tgatttgcttc 71
|||||||||||
Sbjct: 61 tgatttgcttc 71
>27142_eca-mir-361:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattc 60
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactgataattttaaaaagtcccccaggcgtgattc 60
Query: 61 tgatttgcttc 71
|||||||||||
Sbjct: 61 tgatttgcttc 71
>30340_ptr-mir-361:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ggagcttatcagaatctccaggggtactt-ataatttgaaaaagtcccccaggtgtgatt 59
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 1 ggagcttatcagaatctccaggggtactttataatttcaaaaagtcccccaggtgtgatt 60
Query: 60 ctgatttgctt 70
|||||||||||
Sbjct: 61 ctgatttgctt 71
>32880_rno-mir-361:mirbase
Length = 70
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttattatttg-aaaagtcccccaggtgtgattctg 61
Query: 63 att 65
|||
Sbjct: 62 att 64
>32031_mmu-mir-361:mirbase
Length = 70
Score = 97.6 bits (49), Expect = 1e-21
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 agcttatcagaatctccaggggtacttataatttgaaaaagtcccccaggtgtgattctg 62
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 3 agcttatcagaatctccaggggtacttagtatttg-aaaagtcccccaggtgtgattctg 61
Query: 63 atttg 67
|||||
Sbjct: 62 atttg 66
