miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34077_ssc-mir-374b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 14 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 74 gtccgtgtctatggctctcg 93
||||||||||||||||||||
Sbjct: 61 gtccgtgtctatggctctcg 80
>34078_ssc-mir-374b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 14 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 60
Query: 74 gtccgtgtctatggctctcg 93
||||||||||||||||||||
Sbjct: 61 gtccgtgtctatggctctcg 80
>27155_eca-mir-374b:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 60
Query: 72 ttgtccgtgtct 83
||||||||||||
Sbjct: 61 ttgtccgtgtct 72
>32042_mmu-mir-374:mirbase
Length = 95
Score = 141 bits (71), Expect = 1e-34
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1 gaagaaatcctactcggatggatataatacaacctgctaagtgtcctagcacttatcagg 60
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1 gaagaaatcctactcgggtggatataatacaacctgctaagtgttctagcacttagcagg 60
Query: 61 ttgtattatcattgtccgtgtctatggctctcgtc 95
|||||||||||||||||| | |||||||||||||
Sbjct: 61 ttgtattatcattgtccgaggttatggctctcgtc 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
|||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 69 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 24
>27877_mml-mir-374b:mirbase
Length = 72
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccgtgtct 83
||||||||||||
Sbjct: 61 ttgtccgtgtct 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 4/48 (8%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgtcctag--cacttatcaggttgtattat 69
|||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 58 ataatacaacctgctaagtg--ctaggacacttagcaggttgtattat 13
>28614_hsa-mir-374b:mirbase
Length = 72
Score = 135 bits (68), Expect = 6e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccgtgtct 83
||||||||||||
Sbjct: 61 ttgtccgtgtct 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 4/48 (8%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgtcctag--cacttatcaggttgtattat 69
|||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 58 ataatacaacctgctaagtg--ctaggacacttagcaggttgtattat 13
>30351_ptr-mir-374b:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 60
Query: 72 ttgtccgtgtc 82
|||||||||||
Sbjct: 61 ttgtccgtgtc 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 4/48 (8%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgtcctag--cacttatcaggttgtattat 69
|||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 58 ataatacaacctgctaagtg--ctaggacacttagcaggttgtattat 13
>28615_hsa-mir-374c:mirbase
Length = 70
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 70 actcggatggatataatacaacctgctaagtgtcctagcacttagcaggttgtattatca 11
Query: 72 ttgtccgtgt 81
||||||||||
Sbjct: 10 ttgtccgtgt 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 43/48 (89%), Gaps = 4/48 (8%)
Strand = Plus / Plus
Query: 24 ataatacaacctgctaagtgtcctag--cacttatcaggttgtattat 69
|||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 13 ataatacaacctgctaagtg--ctaggacacttagcaggttgtattat 58
>26821_cfa-mir-374b:mirbase
Length = 52
Score = 103 bits (52), Expect = 2e-23
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 22 atataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atataatacaacctgctaagtgtcctagcacttatcaggttgtattatcatt 52
>32887_rno-mir-374:mirbase
Length = 68
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 13 ctcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcat 72
|||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct: 1 ctcggatggatataatacaacctgctaagtgttctagcacttagcacgttgtattattat 60
Query: 73 tgtccg 78
||||||
Sbjct: 61 tgtccg 66
>32043_mmu-mir-374c:mirbase
Length = 49
Score = 81.8 bits (41), Expect = 8e-17
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 22 atataatacaacctgctaagtgtcctagcacttatcaggttgtattatc 70
||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 49 atataatacaacctgctaagtgttctagcacttagcaggttgtattatc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 24 ataatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
|||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 2 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 47
>27154_eca-mir-374a:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| |||||||||||||||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtctgtgt 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>28613_hsa-mir-374a:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cacttatcaggttgtattat 69
||||||||||||||||||||
Sbjct: 33 cacttatcaggttgtattat 14
>30350_ptr-mir-374a:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttatagcacttatcagattgtattgtaattgtctgtgt 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cacttatcaggttgtattat 69
||||||||||||||||||||
Sbjct: 33 cacttatcaggttgtattat 14
>30978_ppy-mir-374a:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| ||||||||||||| ||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttgtagcacttatcagattgtattgtaattgtctgtgt 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cacttatcaggttgtattat 69
||||||||||||||||||||
Sbjct: 33 cacttatcaggttgtattat 14
>33345_bta-mir-374a:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| |||||||||||||||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtctgtgt 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 57 aatacaacctgataagtgctgtaacacttatcaggttgtattat 14
>34076_ssc-mir-374a:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| |||||||||||||||||||| | |||||| ||||
Sbjct: 11 tataatacaacctgataagtgttacagcacttatcaggttgtattgtaattgtctgtgt 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 26 aatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 55 aatacaacctgataagtgctgtaacacttatcaggttgtattat 12
>26820_cfa-mir-374a:mirbase
Length = 52
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtatt 67
|||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 2 tataatacaacctgataagtgttgtagcacttaccaggttgtatt 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cacttatcaggttgtattat 69
||||||||||||||||||||
Sbjct: 22 cacttatcaggttgtattat 3
>27876_mml-mir-374a:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| |||||||||||| ||||||| | |||||| ||||
Sbjct: 13 tataatacaacctgataagtgttacagcacttatcagattgtattgtaattgtctgtgt 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cacttatcaggttgtattat 69
||||||||||||||||||||
Sbjct: 33 cacttatcaggttgtattat 14
