miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33828_oar-mir-379:mirbase
Length = 126
Score = 145 bits (73), Expect = 6e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 2 ggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaac 61
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
Query: 62 atggtccactaactctcagtatcca 86
| |||||||||||||||||||||||
Sbjct: 89 acggtccactaactctcagtatcca 113
>33829_oar-mir-379:mirbase
Length = 126
Score = 145 bits (73), Expect = 6e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 2 ggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaac 61
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
Query: 62 atggtccactaactctcagtatcca 86
| |||||||||||||||||||||||
Sbjct: 89 acggtccactaactctcagtatcca 113
>27161_eca-mir-379:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggctttatgatttttgacctatgtaacatggtccac 60
Query: 71 taactct 77
|||||||
Sbjct: 61 taactct 67
>32895_rno-mir-379:mirbase
Length = 85
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaa 60
|||||||||||||| |||||||||||||||||||||| || || ||| ||||||||||||
Sbjct: 1 tggttcctgcagaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaa 59
Query: 61 catggtccactaactctcagtatcca 86
||||||||||||||||||||||||||
Sbjct: 60 catggtccactaactctcagtatcca 85
>26830_cfa-mir-379:mirbase
Length = 59
Score = 117 bits (59), Expect = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 16 tggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccactaac 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccactaac 59
>27885_mml-mir-379:mirbase
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 71 taactct 77
|||||||
Sbjct: 61 taactct 67
>30986_ppy-mir-379:mirbase
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 71 taactct 77
|||||||
Sbjct: 61 taactct 67
>28632_hsa-mir-379:mirbase
Length = 67
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
Query: 71 taactct 77
|||||||
Sbjct: 61 taactct 67
>30359_ptr-mir-379:mirbase
Length = 66
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 12 gagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccact 71
|||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 1 gagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccact 60
Query: 72 aactct 77
||||||
Sbjct: 61 aactct 66
>32051_mmu-mir-379:mirbase
Length = 66
Score = 101 bits (51), Expect = 8e-23
Identities = 64/67 (95%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 agagatggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccac 70
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatg-tttttgacctatgtaacatggtccac 59
Query: 71 taactct 77
|||||||
Sbjct: 60 taactct 66
>33842_oar-mir-411b:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 40 tgtgatttttgacctatgtaacatggtccactaactctcag 80
|||| ||| |||| |||||||||||||||||||| ||||||
Sbjct: 45 tgtgctttatgacgtatgtaacatggtccactaattctcag 85
>33843_oar-mir-411b:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 40 tgtgatttttgacctatgtaacatggtccactaactctcag 80
|||| ||| |||| |||||||||||||||||||| ||||||
Sbjct: 45 tgtgctttatgacgtatgtaacatggtccactaattctcag 85
>27170_eca-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>27894_mml-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>28641_hsa-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>30366_ptr-mir-411:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 45 tgacgtatgtaacacggtccactaaccctcagtatc 80
>30995_ppy-mir-411:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32062_mmu-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32905_rno-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
>33364_bta-mir-411:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>33840_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
>33841_oar-mir-411a:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatc 110
>34087_ssc-mir-411:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 49 tgacctatgtaacatggtccactaactctcagtatc 84
|||| ||||||||| ||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
