miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33832_oar-mir-381:mirbase
Length = 128
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 42 agcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaagctctc 101
Query: 68 tgtgagta 75
||||||||
Sbjct: 102 tgtgagta 109
>33833_oar-mir-381:mirbase
Length = 128
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 42 agcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaagctctc 101
Query: 68 tgtgagta 75
||||||||
Sbjct: 102 tgtgagta 109
>26832_cfa-mir-381:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatagaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>27163_eca-mir-381:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatagaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>27887_mml-mir-381:mirbase
Length = 75
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>28634_hsa-mir-381:mirbase
Length = 75
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>30361_ptr-mir-381:mirbase
Length = 74
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 7 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 66
Query: 68 tgtgagta 75
||||||||
Sbjct: 67 tgtgagta 74
>30988_ppy-mir-381:mirbase
Length = 75
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>32054_mmu-mir-381:mirbase
Length = 75
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaagctctc 67
Query: 68 tgtgagta 75
||||||||
Sbjct: 68 tgtgagta 75
>34084_ssc-mir-381:mirbase
Length = 82
Score = 87.7 bits (44), Expect = 1e-18
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
|||||||||||||||||||||||||| |||| || || |||||||||||| |||||||||
Sbjct: 11 agcgaggttgccctttgtatattcgggtttt-gaggtggaatatacaaggacaagctctc 69
Query: 68 tgtgagta 75
||||||||
Sbjct: 70 tgtgagta 77
>32897_rno-mir-381:mirbase
Length = 61
Score = 81.8 bits (41), Expect = 6e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||
Sbjct: 1 agcgaggttgccctttgtatattcggtttattgacatgggatatacaagggcaagctctc 60
Query: 68 t 68
|
Sbjct: 61 t 61
>31979_mmu-mir-300:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 gaatatacaagggcaagctctct 68
|||||| ||||||||||||||||
Sbjct: 48 gaatatgcaagggcaagctctct 70
>32835_rno-mir-300:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 gaatatacaagggcaagctctct 68
|||||| ||||||||||||||||
Sbjct: 48 gaatatgcaagggcaagctctct 70
>32836_rno-mir-300:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 gaatatacaagggcaagctctct 68
|||||| ||||||||||||||||
Sbjct: 48 gaatatgcaagggcaagctctct 70
