miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33844_oar-mir-412:mirbase
Length = 124
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 89
Query: 61 tggtccactagctgtccgtacccactgcag 90
||| ||||||||||||||||||||||||||
Sbjct: 90 tgggccactagctgtccgtacccactgcag 119
>33845_oar-mir-412:mirbase
Length = 124
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 89
Query: 61 tggtccactagctgtccgtacccactgcag 90
||| ||||||||||||||||||||||||||
Sbjct: 90 tgggccactagctgtccgtacccactgcag 119
>27171_eca-mir-412:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 4 gggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtacaggagggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgg 60
Query: 64 tccactagctgtccgtaccc 83
||||||||| ||||||||||
Sbjct: 61 tccactagccgtccgtaccc 80
>27895_mml-mir-412:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctg 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 75 tccgtacccactgcag 90
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>28642_hsa-mir-412:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctg 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 75 tccgtacccactgcag 90
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>30367_ptr-mir-412:mirbase
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctg 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 74
Query: 75 tccgtacccactgcag 90
|||||| || ||||||
Sbjct: 75 tccgtatccgctgcag 90
>30996_ppy-mir-412:mirbase
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 15 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagctg 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 75 tccgtacccactgcag 90
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>32063_mmu-mir-412:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
Query: 71 gc 72
||
Sbjct: 68 gc 69
>32064_mmu-mir-412:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 67
Query: 71 gc 72
||
Sbjct: 68 gc 69
>32906_rno-mir-412:mirbase
Length = 70
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 70
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggacggatggtcgaccagctggaaagtaattgtttctaatgtacttcacctggtccacta 61
Query: 71 gc 72
||
Sbjct: 62 gc 63
