miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34094_ssc-mir-429:mirbase
Length = 81
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacacggttagatctggtccttctgtctaatactgtctggt 65
||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 4 gccgatgggtgtcttaccaggcacggttagatctggttcttctgtctaatactgtctggt 63
Query: 66 aatgccgtccatccccgg 83
|||||||||||| |||||
Sbjct: 64 aatgccgtccattcccgg 81
>27176_eca-mir-429:mirbase
Length = 67
Score = 117 bits (59), Expect = 1e-27
Identities = 66/67 (98%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 gggcgtcttaccagacacggttagatctg-gtccttctgtctaatactgtctggtaatgc 70
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gggcgtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgc 60
Query: 71 cgtccat 77
|||||||
Sbjct: 61 cgtccat 67
>26843_cfa-mir-429:mirbase
Length = 85
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 agcctgccgatgggcgtcttaccagacacggttagatct-ggtccttctgtctaatactg 59
||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 1 agcctgctgatgggcgtcttaccagacacggttagatctgggttctggtgtctaatactg 60
Query: 60 tctggtaatgccgtccatcc 79
|||||||||||||| |||||
Sbjct: 61 tctggtaatgccgttcatcc 80
>32069_mmu-mir-429:mirbase
Length = 83
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 cctgccgatgggcgtcttaccagacacggttagatctgg-tccttctgtctaatactgtc 61
||||| ||||| ||||||||||||| |||||||||||| | | ||||||||||||||||
Sbjct: 1 cctgctgatggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtc 60
Query: 62 tggtaatgccgtccatccccggc 84
|||||||||||||||||| ||||
Sbjct: 61 tggtaatgccgtccatccacggc 83
>28649_hsa-mir-429:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 7e-20
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacacggttagatctggtccttctgtctaatactgtctggt 65
||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||
Sbjct: 6 gccgatgggcgtcttaccagacatggttagacctgg-ccctctgtctaatactgtctggt 64
Query: 66 aatgccgtccatcc 79
|| ||||||||||
Sbjct: 65 aaaaccgtccatcc 78
>31003_ppy-mir-429:mirbase
Length = 80
Score = 91.7 bits (46), Expect = 7e-20
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacacggttagatctggtccttctgtctaatactgtctggt 65
||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||
Sbjct: 6 gccgatgggcgtcttaccagacatggttagacctgg-ccgtctgtctaatactgtctggt 64
Query: 66 aatgccgtccatcc 79
|| ||||||||||
Sbjct: 65 aaaaccgtccatcc 78
>25673_xla-mir-429:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 5e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 16 gtcttaccagacacggttagatctgg-tccttctgtctaatactgtctggtaatgccgtc 74
||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
Query: 75 cat 77
|||
Sbjct: 66 cat 68
>27902_mml-mir-429:mirbase
Length = 83
Score = 85.7 bits (43), Expect = 5e-18
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 gccgatgggcgtcttaccagacacggttagatctggtccttctgtctaatactgtctggt 65
||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 6 gccgatgagcgtcttaccagacacggttagacctgg-ctctctgtctaatactgtctggt 64
Query: 66 aatgccgtccatccccggc 84
|| |||||||||| ||||
Sbjct: 65 aaaaccgtccatccgcggc 83
>32910_rno-mir-429:mirbase
Length = 85
Score = 85.7 bits (43), Expect = 5e-18
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 gcctgccgatgggcgtcttaccagacacggttagatctggtcct-tctgtctaatactgt 60
|||||| ||||| ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 2 gcctgctgatggatgtcttaccagacatggttagatctggatgtatctgtctaatactgt 61
Query: 61 ctggtaatgccgtccatcc 79
|||||||||||||||||||
Sbjct: 62 ctggtaatgccgtccatcc 80
>34400_dre-mir-429:mirbase
Length = 82
Score = 69.9 bits (35), Expect = 3e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 gatgggcgtcttaccagacacggttagatctggtc-cttctgtctaatactgtctggtaa 67
||||| |||||||||||||| |||||||| | | ||| ||||||||||||||||||||
Sbjct: 7 gatggacgtcttaccagacatggttagatgtaataacttgtgtctaatactgtctggtaa 66
Query: 68 tgccgtccatc 78
|||||||||||
Sbjct: 67 tgccgtccatc 77
>25860_xtr-mir-429:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 16 gtcttaccagacacggttagatctggtccttct-gtctaatactgtctggtaatgccgt 73
||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacaaggttagatctagttactctcgtctaatactgtctggtaatgccgt 74
>26026_gga-mir-429:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 ttctgtctaatactgtctggtaatgccgtc 74
||||||||||||||||||||||||||||||
Sbjct: 45 ttctgtctaatactgtctggtaatgccgtc 74
>34652_fru-mir-429:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tgtctaatactgtctggtaatgccgtccat 77
||||||||||||||||||||||||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccat 76
>34800_tni-mir-429:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tgtctaatactgtctggtaatgccgtccat 77
||||||||||||||||||||||||||||||
Sbjct: 49 tgtctaatactgtctggtaatgccgtccat 78
>27450_mdo-mir-429:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 1e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 16 gtcttaccagacacggttagatctgg-tccttctgtctaatactgtctggtaatgcc 71
||||||||||||| ||||||||| | | |||||||||||||||||||||||||||
Sbjct: 8 gtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
>31552_oan-mir-429:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 gtctaatactgtctggtaatgccgtc 74
||||||||||||||||||||||||||
Sbjct: 61 gtctaatactgtctggtaatgccgtc 86
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tgtctaatactgtctggtaatgcc 71
|||||||||||| |||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgcc 86
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tctaatactgtctggtaatg 69
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 ctaatactgtctggtaatg 69
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
