miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32072_mmu-mir-433:mirbase
Length = 124
Score = 216 bits (109), Expect = 3e-57
Identities = 118/121 (97%)
Strand = Plus / Plus
Query: 4 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 63
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 4 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 63
Query: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccacaccatgaaggcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccacaccatgaaggcagcc 123
Query: 124 c 124
|
Sbjct: 124 c 124
>33848_oar-mir-433:mirbase
Length = 114
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 66
Query: 61 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
>33849_oar-mir-433:mirbase
Length = 114
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tggccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttg 66
Query: 61 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agaaggatcatgatgggctcctcggtgttctccaggtagcggcaccac 114
>27179_eca-mir-433:mirbase
Length = 124
Score = 208 bits (105), Expect = 7e-55
Identities = 117/121 (96%)
Strand = Plus / Plus
Query: 4 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 63
||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct: 4 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttaaga 63
Query: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccacaccatgaaggcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aggatcatgatgggctcctcggtgttctccaggtagcggcaccacaccatgaaggcagcc 123
Query: 124 c 124
|
Sbjct: 124 c 124
>28652_hsa-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 4 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 63
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 64 aggatcatgatgggctcctcggtgttctccagg 96
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>31006_ppy-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 4 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 63
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 64 aggatcatgatgggctcctcggtgttctccagg 96
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>32912_rno-mir-433:mirbase
Length = 93
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 4 ccggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgaga 63
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 1 ccggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgaga 60
Query: 64 aggatcatgatgggctcctcggtgttctccagg 96
|||||||||||||||||||||||||||||||||
Sbjct: 61 aggatcatgatgggctcctcggtgttctccagg 93
>30375_ptr-mir-433:mirbase
Length = 92
Score = 159 bits (80), Expect = 6e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 5 cggggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaa 64
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1 cggggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaa 60
Query: 65 ggatcatgatgggctcctcggtgttctccagg 96
||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcatgatgggctcctcggtgttctccagg 92
>27905_mml-mir-433:mirbase
Length = 93
Score = 155 bits (78), Expect = 9e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 7 gggagaagtacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaagg 66
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 4 gggagaagtacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaagg 63
Query: 67 atcatgatgggctcctcggtgttctccagg 96
||||||||||||||||||||||||||||||
Sbjct: 64 atcatgatgggctcctcggtgttctccagg 93
>26845_cfa-mir-433:mirbase
Length = 74
Score = 123 bits (62), Expect = 3e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 15 tacggtgagcctgtcattgttcagagaggctagatcctccttgttgagaaggatcatgat 74
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacggtgagcctgtcattattcagagaggctagatcctctgtgttgagaaggatcatgat 60
Query: 75 gggctcctcggtgt 88
||||||||||||||
Sbjct: 61 gggctcctcggtgt 74
