miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26846_cfa-mir-448:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 98/108 (90%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaagggggc- 62
Query: 64 ttggctggttgcatatgtaggatgtcccatctccccacccacatcatc 111
||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 63 -tggctggttgcatatgtaggatgtcccatctccccgcccacttcatc 109
>27180_eca-mir-448:mirbase
Length = 109
Score = 139 bits (70), Expect = 5e-34
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 1 gcggggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnn 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 gcggggaggttgaacatcctgcatagtgctgccaggaaatccccattttatactaagagg 61
Query: 61 nnnttggctggttgcatatgtaggatgtcccatctcccc 99
|||||||||||||||||||||||||||||||||||
Sbjct: 62 gggctggctggttgcatatgtaggatgtcccatctcccc 100
>32914_rno-mir-448:mirbase
Length = 112
Score = 127 bits (64), Expect = 2e-30
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 2 cggggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnn 61
|||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 2 cggggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagaggg 61
Query: 62 nnttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 62 ggctggctggttgcatatgtaggatgtcccatctccc 98
>27906_mml-mir-448:mirbase
Length = 111
Score = 123 bits (62), Expect = 3e-29
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcatactaagaggggc 63
Query: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 64 -tggctggttgcatatgtaggatgtcccatctccc 97
>32075_mmu-mir-448:mirbase
Length = 112
Score = 119 bits (60), Expect = 4e-28
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnnt 64
||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcc 97
>32076_mmu-mir-448:mirbase
Length = 112
Score = 119 bits (60), Expect = 4e-28
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnnt 64
||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 5 ggaggttgaacatcctgcatagtgctgccaggaaatccctacttcatactaagagggggc 64
Query: 65 tggctggttgcatatgtaggatgtcccatctcc 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 tggctggttgcatatgtaggatgtcccatctcc 97
>28653_hsa-mir-448:mirbase
Length = 111
Score = 115 bits (58), Expect = 7e-27
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
Query: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 63 ctggctggttgcatatgtaggatgtcccatctccc 97
>30376_ptr-mir-448:mirbase
Length = 110
Score = 115 bits (58), Expect = 7e-27
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 3 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 61
Query: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 62 ctggctggttgcatatgtaggatgtcccatctccc 96
>31007_ppy-mir-448:mirbase
Length = 111
Score = 115 bits (58), Expect = 7e-27
Identities = 85/95 (89%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctattttatactaannnnnnn 63
||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 4 gggaggttgaacatcctgcatagtgctgccaggaaatccctatttcata-taagaggggg 62
Query: 64 ttggctggttgcatatgtaggatgtcccatctccc 98
||||||||||||||||||||||||||||||||||
Sbjct: 63 ctggctggttgcatatgtaggatgtcccatctccc 97
