miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26847_cfa-mir-449:mirbase
Length = 91
Score = 141 bits (71), Expect = 9e-35
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 4 tgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaac 63
Query: 61 atgcaactgctatcttattgcat 83
|||||||||||||||||||||||
Sbjct: 64 atgcaactgctatcttattgcat 86
>27907_mml-mir-449a:mirbase
Length = 91
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 4 tgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcagctaac 63
Query: 61 atgcaactgctatcttattgcat 83
||||||||||| |||||||||||
Sbjct: 64 atgcaactgctgtcttattgcat 86
>28654_hsa-mir-449a:mirbase
Length = 91
Score = 117 bits (59), Expect = 1e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||| | ||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 4 tgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaac 63
Query: 61 atgcaactgctatcttattgcat 83
||||||||||| |||||||||||
Sbjct: 64 atgcaactgctgtcttattgcat 86
>30377_ptr-mir-449a:mirbase
Length = 90
Score = 109 bits (55), Expect = 3e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||| | ||||||||||||||||||| ||||||||||||| || |||| ||||||
Sbjct: 3 tgtgtgatgagctggcagtgtattgttagctcgttgaatatgtgaatggcatcggctaac 62
Query: 61 atgcaactgctatcttattgcat 83
||||||||||| |||||||||||
Sbjct: 63 atgcaactgctgtcttattgcat 85
>31008_ppy-mir-449a:mirbase
Length = 91
Score = 109 bits (55), Expect = 3e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
||||||||| | ||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 4 tgtgtgatgagctggcagtgtattgttagctggttgaatatgtgaatggcatcggctaac 63
Query: 61 atgcaactgctatcttattgcat 83
|||||||||| |||||||||||
Sbjct: 64 gtgcaactgctgtcttattgcat 86
>32077_mmu-mir-449a:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
|||||||||| |||||||||||||||||||||||||| |||||||| | || ||||||||
Sbjct: 4 tgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaac 63
Query: 61 atgcaactgctatcttattgca 82
|||| |||||| || |||||||
Sbjct: 64 atgcgactgctctcctattgca 85
>32915_rno-mir-449a:mirbase
Length = 91
Score = 91.7 bits (46), Expect = 8e-20
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 1 tgtgtgatgggttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaac 60
|||| |||||||||||||||||||||||||||||||| ||||| | | || ||||||||
Sbjct: 4 tgtgcgatgggttggcagtgtattgttagctggttgagtatgtaaaaggcaccagctaac 63
Query: 61 atgcaactgctatcttattgca 82
||||||||||| || |||||||
Sbjct: 64 atgcaactgctctcctattgca 85
>27181_eca-mir-449a:mirbase
Length = 60
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 13 tggcagtgtattgttagctggttgaatatgtgagtgccatcagctaacatgcaactgcta 72
||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||
Sbjct: 1 tggcagtgtattgttagctggttgaatatatgaatggcatcagctaacaagcaactgcta 60
>27451_mdo-mir-449:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 5/74 (6%)
Strand = Plus / Plus
Query: 3 tgtgatgggttggcagtgtattgttagctggttgaatatgtga--gtgccatcagctaac 60
||||||||| ||||||||||||||||||||||||| ||| ||| |||| ||||||||
Sbjct: 1 tgtgatgggatggcagtgtattgttagctggttgactatctgaacgtgc---cagctaac 57
Query: 61 atgcaactgctatc 74
||||||||||||||
Sbjct: 58 atgcaactgctatc 71
>31553_oan-mir-449a:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 12 ttggcagtgtattgttagctggttgaatatgtgagtgccatcagctaacatgcaactgct 71
|||||||||| ||||||||||||||||||| | | || || ||||| ||| || |||||
Sbjct: 28 ttggcagtgt-ttgttagctggttgaatatttaaatggcaccagctgacagacagctgct 86
Query: 72 atcttattgcatgta 86
|| |||||||||||
Sbjct: 87 ttcctattgcatgta 101
>27908_mml-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ggcagtgtattgttagctgg 33
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28655_hsa-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ggcagtgtattgttagctgg 33
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>30378_ptr-mir-449b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ggcagtgtattgttagctgg 33
||||||||||||||||||||
Sbjct: 16 ggcagtgtattgttagctgg 35
>31009_ppy-mir-449b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ggcagtgtattgttagctgg 33
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>33378_bta-mir-449b:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ggcagtgtattgttagctgg 33
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
