miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28655_hsa-mir-449b:mirbase
Length = 97
Score = 163 bits (82), Expect = 3e-41
Identities = 95/98 (96%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctt-gggtcaagtcagcagcc 59
Query: 61 acaactgccctgccacttgcttctggataaattcttct 98
|||||| |||||||||||||||||||||||||||||||
Sbjct: 60 acaactaccctgccacttgcttctggataaattcttct 97
>31009_ppy-mir-449b:mirbase
Length = 97
Score = 163 bits (82), Expect = 3e-41
Identities = 95/98 (96%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgg-tcaagtcagcagcc 59
Query: 61 acaactgccctgccacttgcttctggataaattcttct 98
|||||| |||||||||||||||||||||||||||||||
Sbjct: 60 acaactaccctgccacttgcttctggataaattcttct 97
>30378_ptr-mir-449b:mirbase
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 94/97 (96%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 2 gacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcca 61
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 gacctgaatcaggtaggcagtgtattgttagctggctgctt-gggtcaagtcagcagcca 59
Query: 62 caactgccctgccacttgcttctggataaattcttct 98
||||| |||||||||||||||||||||||||||||||
Sbjct: 60 caactaccctgccacttgcttctggataaattcttct 96
>27908_mml-mir-449b:mirbase
Length = 97
Score = 155 bits (78), Expect = 7e-39
Identities = 94/98 (95%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctttgggtcaattcagcagcc 60
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 1 tgacctgaatcaggtaggcagtgtattgttagctggctgctt-gagtcaagtcagcagcc 59
Query: 61 acaactgccctgccacttgcttctggataaattcttct 98
|||||| |||||||||||||||||||||||||||||||
Sbjct: 60 acaactaccctgccacttgcttctggataaattcttct 97
>32078_mmu-mir-449b:mirbase
Length = 80
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/74 (87%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 13 ggtaggcagtgtattgttagctggctgctttgggtcaattcagcagccacaactgccctg 72
|||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 8 ggtaggcagtgt--tgttagctggctgcgttgggtcaggccagcagccacagctaccctg 65
Query: 73 ccacttgcttctgg 86
|||||| |||||||
Sbjct: 66 ccacttccttctgg 79
>31554_oan-mir-449b:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 14 gtaggcagtgtattgttagctggctgctttgggtcaattcagcagccac 62
||||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct: 20 gtaggcagtgtgatgtttgctggctgctttgaatcgattcagcagccac 68
>26847_cfa-mir-449:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>27181_eca-mir-449a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 2 ggcagtgtattgttagctgg 21
>27451_mdo-mir-449:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 12 ggcagtgtattgttagctgg 31
>27907_mml-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28654_hsa-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>28656_hsa-mir-449c:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tcaggtaggcagtgtattgttagc 33
||||||||||||||||||| ||||
Sbjct: 12 tcaggtaggcagtgtattgctagc 35
>31008_ppy-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>32077_mmu-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>32915_rno-mir-449a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 17 ggcagtgtattgttagctgg 36
>33377_bta-mir-449a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ggcagtgtattgttagctgg 36
||||||||||||||||||||
Sbjct: 14 ggcagtgtattgttagctgg 33
