miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28656_hsa-mir-449c:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/86 (87%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 12 atgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgct 71
||||||||||||||||||| || ||||| ||||||||| | ||||||||||||||
Sbjct: 7 atgtgtcaggtaggcagtgtattgctagc-ggctgttaa----tgattttaacagttgct 61
Query: 72 agttgcactcccctctgttgcattca 97
||||||||||| ||||||||||||||
Sbjct: 62 agttgcactcctctctgttgcattca 87
>32079_mmu-mir-449c:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 tgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgcta 72
||||||||| ||||||||||| |||||||||||||| || || | |||||||||||
Sbjct: 16 tgtgtcaggcaggcagtgcattgctagctggctgttagaactttatcccaacagttgcta 75
Query: 73 gttgcactcccctctgttgca 93
| |||||| ||||||| ||||
Sbjct: 76 gctgcactaccctctgctgca 96
>32916_rno-mir-449c:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 tgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgcta 72
|||||||| ||||||||||| |||||||||||||| || ||| | |||||| ||||
Sbjct: 10 tgtgtcagacaggcagtgcattgctagctggctgttagaacttcgtcccaacagtggcta 69
Query: 73 gttgcactcccctctgttgca 93
| |||||| ||||||| ||||
Sbjct: 70 gctgcactaccctctgctgca 90
>32917_rno-mir-449c:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 tgtgtcaggtaggcagtgcatctctagctggctgttaaaatttctttttaacagttgcta 72
|||||||| ||||||||||| |||||||||||||| || ||| | |||||| ||||
Sbjct: 10 tgtgtcagacaggcagtgcattgctagctggctgttagaacttcgtcccaacagtggcta 69
Query: 73 gttgcactcccctctgttgca 93
| |||||| ||||||| ||||
Sbjct: 70 gctgcactaccctctgctgca 90
