miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28668_hsa-mir-483:mirbase
          Length = 76

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 39 ctcctcactcctctcctcccgtcttctcct 68
          ||||||||||||||||||||||||||||||
Sbjct: 44 ctcctcactcctctcctcccgtcttctcct 73





>28669_hsa-mir-483:mirbase
          Length = 76

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 39 ctcctcactcctctcctcccgtcttctcct 68
          ||||||||||||||||||||||||||||||
Sbjct: 44 ctcctcactcctctcctcccgtcttctcct 73





>26854_cfa-mir-483:mirbase
          Length = 69

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  gagggcgggaagaaaggagggcgtggtctg-tgcagctcctcactcctctcctcccgtct 62
          |||| ||||| ||||||||| |||||| |  ||||| |||||||||||| ||||||||||
Sbjct: 1  gaggacgggaggaaaggaggacgtggtttcatgcaggtcctcactcctcccctcccgtct 60

            
Query: 63 tc 64
          ||
Sbjct: 61 tc 62





>32172_mmu-mir-483:mirbase
          Length = 73

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 41 cctcactcctctcctcccgtctt 63
          ||||||||||| |||||||||||
Sbjct: 43 cctcactcctcccctcccgtctt 65





>32928_rno-mir-483:mirbase
          Length = 73

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 41 cctcactcctctcctcccgtctt 63
          ||||||||||| |||||||||||
Sbjct: 43 cctcactcctcccctcccgtctt 65