miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34106_ssc-mir-486-2:mirbase
Length = 82
Score = 125 bits (63), Expect = 8e-30
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 22 ccctgacgggtcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcag 81
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct: 1 ccctgacgggtcctgtactgagctgccccgaggccc-tcactgtgcccagctcgggccag 59
Query: 82 ctcagtaccgggcgcgtcggggt 104
||||||||| |||||||||||||
Sbjct: 60 ctcagtacccggcgcgtcggggt 82
>32175_mmu-mir-486:mirbase
Length = 128
Score = 109 bits (55), Expect = 5e-25
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 19 cctccctgacgggtcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggt 78
||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 20 cctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcgggg 79
Query: 79 cagctcagtaccgggcgcgtcggggtgggag 109
||||||||||| || ||||| |||||||||
Sbjct: 80 cagctcagtacaggatgcgtcagggtgggag 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 22 ccctgacgggtcctgtactgagctgccccgag 53
|||||||| ||||||||||||||||||||||
Sbjct: 104 ccctgacgcatcctgtactgagctgccccgag 73
>32567_mmu-mir-3107:mirbase
Length = 90
Score = 105 bits (53), Expect = 8e-24
Identities = 80/89 (89%)
Strand = Plus / Minus
Query: 19 cctccctgacgggtcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggt 78
||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 89 cctccctgaggggtcctgtactgagctgccccgaggtccttcactgtgctcagctcgggg 30
Query: 79 cagctcagtaccgggcgcgtcggggtggg 107
||||||||||| || ||||| |||||||
Sbjct: 29 cagctcagtacaggatgcgtcagggtggg 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 22 ccctgacgggtcctgtactgagctgccccgag 53
|||||||| ||||||||||||||||||||||
Sbjct: 5 ccctgacgcatcctgtactgagctgccccgag 36
>27190_eca-mir-486:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 5e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>27191_eca-mir-486:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 5e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcactgtgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>34105_ssc-mir-486-1:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 3e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 gccagcttggacctgcgtcctccctgacgggtcctgtactgagctgccccgaggccct 58
||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gccagctcggacctctgacctccctgacgggtcctgtactgagctgccccgaggccct 72
>27922_mml-mir-486:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 65 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 8
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgag 25
>27923_mml-mir-486:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 65 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 8
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 4 tcctgtactgagctgccccgag 25
>28673_hsa-mir-486:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>28674_hsa-mir-486:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>30389_ptr-mir-486:mirbase
Length = 67
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
>31022_ppy-mir-486:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 7e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 32 tcctgtactgagctgccccgaggcccttcgctgtgcccagctcgggtcagctcagtac 89
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 4 tcctgtactgagctgccccgaggcccttcatgctgcccagctcggggcagctcagtac 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tcctgtactgagctgccccgag 53
||||||||||||||||||||||
Sbjct: 65 tcctgtactgagctgccccgag 44
