miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28676_hsa-mir-487b:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>31024_ppy-mir-487b:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>30391_ptr-mir-487b:mirbase
Length = 83
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctgttcgttttgctcatgtcgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatcaa 84
|||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatcaa 83
>34107_ssc-mir-487b:mirbase
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 5 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtc 60
Query: 65 atccactttttcagtatc 82
||||||||||||||||||
Sbjct: 61 atccactttttcagtatc 78
>27925_mml-mir-487b:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttgctcgtgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>33854_oar-mir-487b:mirbase
Length = 106
Score = 151 bits (76), Expect = 9e-38
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
Query: 61 ggtcatccactttttcagtatcaa 84
|||||||||| |||||||||||||
Sbjct: 70 ggtcatccac-ttttcagtatcaa 92
>33855_oar-mir-487b:mirbase
Length = 106
Score = 151 bits (76), Expect = 9e-38
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 69
Query: 61 ggtcatccactttttcagtatcaa 84
|||||||||| |||||||||||||
Sbjct: 70 ggtcatccac-ttttcagtatcaa 92
>27193_eca-mir-487b:mirbase
Length = 84
Score = 143 bits (72), Expect = 2e-35
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 ttggtacttggagagtggttatccctgtcctgttcgttttaattacgtcgaatcgtacag 60
Query: 61 ggtcatccactttttcagtatcaa 84
||||||||||||||||||||||||
Sbjct: 61 ggtcatccactttttcagtatcaa 84
>32176_mmu-mir-487b:mirbase
Length = 82
Score = 131 bits (66), Expect = 9e-32
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 61
|||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcactcatgccgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatca 83
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>32931_rno-mir-487b:mirbase
Length = 82
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 2 tggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagg 61
|||||||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||
Sbjct: 1 tggtacttggagagtggttatccctgtcctcttcgcttcacttatgccgaatcgtacagg 60
Query: 62 gtcatccactttttcagtatca 83
||||||||||||||||||||||
Sbjct: 61 gtcatccactttttcagtatca 82
>26857_cfa-mir-487b:mirbase
Length = 58
Score = 115 bits (58), Expect = 5e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 15 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggtcatccactt 58
>26856_cfa-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27192_eca-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>27924_mml-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
||||||||||||||||| ||||||| |||||| ||| | ||| |||||| |||||||
Sbjct: 1 ggtacttggagagtggtcatccctgctgtgttcgctttgtttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>28675_hsa-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>31023_ppy-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| || | | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgcttaatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33392_bta-mir-487a:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 62
|||||||| |||||||||||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctgtatttatgacgaatcatacaggg 60
Query: 63 tcatccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>33852_oar-mir-487a:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
|||||||||| ||||||| |||||||| |||||| | || | ||| |||||| |||||
Sbjct: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
Query: 61 ggtcatccactttttcagtatcaa 84
|| |||||| ||||||||||||||
Sbjct: 69 ggacatccagtttttcagtatcaa 92
>33853_oar-mir-487a:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 ttggtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacag 60
|||||||||| ||||||| |||||||| |||||| | || | ||| |||||| |||||
Sbjct: 9 ttggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacag 68
Query: 61 ggtcatccactttttcagtatcaa 84
|| |||||| ||||||||||||||
Sbjct: 69 ggacatccagtttttcagtatcaa 92
>30390_ptr-mir-487a:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 4 gtacttggagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacagggt 63
||||||| |||||||||||||||| |||||| | | | ||| |||||| |||||||
Sbjct: 1 gtacttgaagagtggttatccctgctgtgttcgctgaatttatgacgaatcatacaggga 60
Query: 64 catccactttttcagtatc 82
|||||| ||||||||||||
Sbjct: 61 catccagtttttcagtatc 79
>32890_rno-mir-376b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatcaa 84
|||||||||||||||||||||
Sbjct: 65 catccactttttcagtatcaa 85
>32891_rno-mir-376b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatcaa 84
|||||||||||||||||||||
Sbjct: 65 catccactttttcagtatcaa 85
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 catccactttttcagtatca 83
||||||||||||||||||||
Sbjct: 63 catccactttttcagtatca 82
