miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32177_mmu-mir-488:mirbase
Length = 109
Score = 151 bits (76), Expect = 1e-37
Identities = 91/96 (94%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct: 14 gagaatcctctctcccagataatagcactctcaaacaagtttccatgttgtttgaaaggc 73
Query: 61 tgtttcttggtcagaagactctcaattccttctgga 96
||||||||||||||||||||||||||| ||||||||
Sbjct: 74 tgtttcttggtcagaagactctcaatttcttctgga 109
>27194_eca-mir-488:mirbase
Length = 83
Score = 141 bits (71), Expect = 1e-34
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagtttccaagttgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactctc 83
| |||||||||||||||||||||
Sbjct: 61 tatttcttggtcagaagactctc 83
>26858_cfa-mir-488:mirbase
Length = 83
Score = 133 bits (67), Expect = 3e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagttttcaagttgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactctc 83
| |||||||||||||||||||||
Sbjct: 61 tatttcttggtcagaagactctc 83
>27926_mml-mir-488:mirbase
Length = 83
Score = 133 bits (67), Expect = 3e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagtttccaagttgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactctc 83
| ||||||||||||| |||||||
Sbjct: 61 tatttcttggtcagatgactctc 83
>31025_ppy-mir-488:mirbase
Length = 83
Score = 133 bits (67), Expect = 3e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagtttccaagttgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactctc 83
| ||||||||||||| |||||||
Sbjct: 61 tatttcttggtcagatgactctc 83
>28677_hsa-mir-488:mirbase
Length = 83
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagtttccaaattgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactctc 83
| ||||||||||||| |||||||
Sbjct: 61 tatttcttggtcagatgactctc 83
>32932_rno-mir-488:mirbase
Length = 79
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 4 aatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggctgt 63
|||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 1 aatcctctctcccagataatggcactctcaaacaagtttctacattgtttgaaaggctgt 60
Query: 64 ttcttggtcagaagactct 82
|||||||||||||||||||
Sbjct: 61 ttcttggtcagaagactct 79
>30392_ptr-mir-488:mirbase
Length = 82
Score = 115 bits (58), Expect = 6e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 gagaatcatctctcccagataatggcactctcaaacaggtttccaggttgtttgaaaggc 60
||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct: 1 gagaatcatctctcccagataatggcactctcaaacaagttttcaaattgtttgaaaggc 60
Query: 61 tgtttcttggtcagaagactct 82
| ||||||||||||| ||||||
Sbjct: 61 tatttcttggtcagatgactct 82
