miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26859_cfa-mir-489:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggccgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatatggcgactaaactgct 82
|||||| |||| ||||||||||
Sbjct: 61 catatacggcggctaaactgct 82
>31026_ppy-mir-489:mirbase
Length = 84
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatatggcgactaaactgct 82
|||||| ||| ||||||||||
Sbjct: 61 catatacggcagctaaactgct 82
>27927_mml-mir-489:mirbase
Length = 84
Score = 111 bits (56), Expect = 8e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatatggcgactaaactg 80
|||||| ||| ||||||||
Sbjct: 61 catatacggcagctaaactg 80
>28678_hsa-mir-489:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
|||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatatggcgactaaactgct 82
|||||| ||| ||||||||||
Sbjct: 61 catatacggcagctaaactgct 82
>30393_ptr-mir-489:mirbase
Length = 83
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatca 60
|||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtgacgccatttacttgaacctttaggagtgacatca 60
Query: 61 catatatggcgactaaactgct 82
|||||| ||| ||||||||||
Sbjct: 61 catatacggcagctaaactgct 82
>27195_eca-mir-489:mirbase
Length = 85
Score = 93.7 bits (47), Expect = 2e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 gtggcagcttggtggtcgtatgtgtggcgccatctactgga-acgtttaggagtgacatc 59
||||||||||||||||||||||||||||||||| || | || | |||||||||||||||
Sbjct: 1 gtggcagcttggtggtcgtatgtgtggcgccatttatttgacccctttaggagtgacatc 60
Query: 60 acatatatggcgactaaactgct 82
||||||| |||| ||||||||||
Sbjct: 61 acatatacggcggctaaactgct 83
>26040_gga-mir-489:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatcacatata 66
||||||||||||||||| || || ||| |||| | || |||||||||||||||| || ||
Sbjct: 7 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 66
Query: 67 tggcgactaaactgct 82
||| ||||||||||
Sbjct: 67 cggctgctaaactgct 82
>26539_tgu-mir-489:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatcacatata 66
||||||||||||||||| || || ||| |||| | || |||||||||||||||| || ||
Sbjct: 13 gcttggtggtcgtatgtatgacgtcatttacttggacttttaggagtgacatcatatgta 72
Query: 67 tggcgactaaactgct 82
||| ||||||||||
Sbjct: 73 cggctgctaaactgct 88
>25864_xtr-mir-489:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 7 gcttggtggtcgtatgtgtggcgccatctactggaacgtttaggagtgacatcacatata 66
|||| |||||||||||| || || ||| ||||||| |||||||||||||||| || ||
Sbjct: 7 gcttagtggtcgtatgtatgacgtcatttactggattttttaggagtgacatcatatgta 66
Query: 67 tggcgactaaactgct 82
||| ||||||||||
Sbjct: 67 cggctgctaaactgct 82
>32933_rno-mir-489:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 tgacatcacatatatggcgactaaactg 80
|||||||||||||||||| ||||||||
Sbjct: 62 tgacatcacatatatggcagctaaactg 89
