miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27928_mml-mir-490:mirbase
Length = 128
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
>27929_mml-mir-490:mirbase
Length = 128
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
>28679_hsa-mir-490:mirbase
Length = 128
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
>28680_hsa-mir-490:mirbase
Length = 128
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 126
>30394_ptr-mir-490:mirbase
Length = 127
Score = 220 bits (111), Expect = 2e-58
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 66
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agatgcaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
>31027_ppy-mir-490:mirbase
Length = 128
Score = 212 bits (107), Expect = 5e-56
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcggacacttc 126
>31028_ppy-mir-490:mirbase
Length = 128
Score = 212 bits (107), Expect = 5e-56
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 7 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8 cttgctggtttggaaagttcattgttcgacaccatggatctccaggtgggtcaagtttag 67
Query: 67 agatacaccaacctggaggactccatgctgttgagctgttcacaagcagcggacacttc 125
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 68 agatgcaccaacctggaggactccatgctgttgagctgttcacgagcagcggacacttc 126
>26860_cfa-mir-490:mirbase
Length = 81
Score = 161 bits (81), Expect = 2e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 20 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacc 60
Query: 80 tggaggactccatgctgttga 100
|||||||||||||||||||||
Sbjct: 61 tggaggactccatgctgttga 81
>32179_mmu-mir-490:mirbase
Length = 84
Score = 159 bits (80), Expect = 6e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 17 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacacca 76
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 77 acctggaggactccatgctgttga 100
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>32180_mmu-mir-490:mirbase
Length = 84
Score = 159 bits (80), Expect = 6e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 17 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacacca 76
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 77 acctggaggactccatgctgttga 100
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>32934_rno-mir-490:mirbase
Length = 84
Score = 159 bits (80), Expect = 6e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 17 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacacca 76
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagatatacacca 60
Query: 77 acctggaggactccatgctgttga 100
||||||||||||||||||||||||
Sbjct: 61 acctggaggactccatgctgttga 84
>26041_gga-mir-490:mirbase
Length = 93
Score = 139 bits (70), Expect = 6e-34
Identities = 88/93 (94%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 21 aagttcattgttcgacaccatggatctccaggtgggtcacgttta--gagatacaccaac 78
|||||||| |||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 1 aagttcatggttcgacaccatggatctccaggtgggtcaagattatagagatacaccaac 60
Query: 79 ctggaggactccatgctgttgagctgttcacaa 111
|||||||||||||||||||||||||||||||||
Sbjct: 61 ctggaggactccatgctgttgagctgttcacaa 93
>27196_eca-mir-490:mirbase
Length = 69
Score = 137 bits (69), Expect = 2e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 32 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 92 tgctgttga 100
|||||||||
Sbjct: 61 tgctgttga 69
>27197_eca-mir-490:mirbase
Length = 69
Score = 137 bits (69), Expect = 2e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 32 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggactcca 60
Query: 92 tgctgttga 100
|||||||||
Sbjct: 61 tgctgttga 69
>34108_ssc-mir-490:mirbase
Length = 79
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 28 ttgttcgacaccatggatctccaggtgggtcacgtttagagatacaccaacctggaggac 87
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ttgttcgacaccatggatccccaggtgggtcacgtttcaagatacaccaacctggaggac 60
Query: 88 tccatgctgttgagctgtt 106
|||||||||||||||||||
Sbjct: 61 tccatgctgttgagctgtt 79
>31560_oan-mir-490:mirbase
Length = 124
Score = 117 bits (59), Expect = 2e-27
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 16 ttggaaagttcattgttcgacaccatggatctccaggtgggtcacgtttagagatacacc 75
|||||||||||| ||||||| |||||||||||||||||||||| | ||||||| ||||
Sbjct: 8 ttggaaagttcacggttcgacgccatggatctccaggtgggtcaaggttagagacgcacc 67
Query: 76 aacctggaggactccatgctgttgagctgttcacaagca 114
|||||||||||||||||||||| |||||| |||| ||||
Sbjct: 68 aacctggaggactccatgctgtcgagctgatcacgagca 106
>26540_tgu-mir-490-1:mirbase
Length = 93
Score = 113 bits (57), Expect = 3e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 22 agttcattgttcgacaccatggatctccaggtgggtcacgtt--tagagatacaccaacc 79
||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagataatagagatacaccaacc 65
Query: 80 tggaggactccatgctgttgagctgttc 107
|||||||||||||||||| |||||||||
Sbjct: 66 tggaggactccatgctgtcgagctgttc 93
>26541_tgu-mir-490-2:mirbase
Length = 93
Score = 113 bits (57), Expect = 3e-26
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 22 agttcattgttcgacaccatggatctccaggtgggtcacgttta--gagatacaccaacc 79
||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 6 agttcatgcttcgacaccatggatctccaggtgggtcaagattatagagatacaccaacc 65
Query: 80 tggaggactccatgctgttgagctgttc 107
|||||||||||||||||| |||||||||
Sbjct: 66 tggaggactccatgctgtcgagctgttc 93
