miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33856_oar-mir-493:mirbase
Length = 115
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 70
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
|||||||||||||||||||||||||||||
Sbjct: 71 ggtctactgtgtgccaggccctgtgccag 99
>33857_oar-mir-493:mirbase
Length = 115
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 70
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
|||||||||||||||||||||||||||||
Sbjct: 71 ggtctactgtgtgccaggccctgtgccag 99
>27933_mml-mir-493:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcctccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
|||||||||||||||||||||||||||||
Sbjct: 61 ggtctactgtgtgccaggccctgtgccag 89
>28684_hsa-mir-493:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcctccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
|||||||||||||||||||||||||||||
Sbjct: 61 ggtctactgtgtgccaggccctgtgccag 89
>31032_ppy-mir-493:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcctccagggctttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
|||||||||||||||||||||||||||||
Sbjct: 61 ggtctactgtgtgccaggccctgtgccag 89
>27203_eca-mir-493b:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 ctggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcctccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaa 60
Query: 61 ggtctactgtgtgccaggccctgtgccag 89
||||| | ||||||||||| |||||||||
Sbjct: 61 ggtcttccgtgtgccaggctctgtgccag 89
>32935_rno-mir-493:mirbase
Length = 84
Score = 145 bits (73), Expect = 6e-36
Identities = 83/85 (97%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 ggcccccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaagg 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggcctccagggccttgtacatggtaggctttcattcatt-gtttgcacattcggtgaagg 59
Query: 63 tctactgtgtgccaggccctgtgcc 87
|||||||||||||||||||||||||
Sbjct: 60 tctactgtgtgccaggccctgtgcc 84
>32182_mmu-mir-493:mirbase
Length = 83
Score = 123 bits (62), Expect = 2e-29
Identities = 79/82 (96%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 8 ccagggccttgtacatggtaggctttcattcattcgtttgcacattcggtgaaggt-cta 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 3 ccagggccttgtacatggtaggctttcattcatt-ttttgcacattcggtgaaggtccta 61
Query: 67 ctgtgtgccaggccctgtgcca 88
||||||||||||||||||||||
Sbjct: 62 ctgtgtgccaggccctgtgcca 83
>26862_cfa-mir-493:mirbase
Length = 61
Score = 121 bits (61), Expect = 9e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 17 tgtacatggtaggctttcattcattcgtttgcacattcggtgaaggtctactgtgtgcca 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtacatggtaggctttcattcattcgtttgcacattcggtgaaggtctactgtgtgcca 60
Query: 77 g 77
|
Sbjct: 61 g 61
