miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33858_oar-mir-494:mirbase
Length = 98
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tcgatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6 tcgatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacataca 65
Query: 61 cgggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||||
Sbjct: 66 cgggaaacctcttttttagtatcaa 90
>33859_oar-mir-494:mirbase
Length = 98
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tcgatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6 tcgatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacataca 65
Query: 61 cgggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||||
Sbjct: 66 cgggaaacctcttttttagtatcaa 90
>32183_mmu-mir-494:mirbase
Length = 85
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 62
Query: 63 ggaaacctcttttttagtatcaa 85
|||||||||||||||||||||||
Sbjct: 63 ggaaacctcttttttagtatcaa 85
>32936_rno-mir-494:mirbase
Length = 83
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 61
Query: 63 ggaaacctcttttttagtatca 84
||||||||||||||||||||||
Sbjct: 62 ggaaacctcttttttagtatca 83
>26863_cfa-mir-494:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>27204_eca-mir-494:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>28685_hsa-mir-494:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>31033_ppy-mir-494:mirbase
Length = 81
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>30397_ptr-mir-494:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 4 atacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgg 60
Query: 64 gaaacctcttttttagtatc 83
||||||||||||||||||||
Sbjct: 61 gaaacctcttttttagtatc 80
>27934_mml-mir-494:mirbase
Length = 81
Score = 137 bits (69), Expect = 1e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 3 gatacttgaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacg 62
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatactcgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatacacg 60
Query: 63 ggaaacctcttttttagtatc 83
||||||||||| |||||||||
Sbjct: 61 ggaaacctcttctttagtatc 81
>34110_ssc-mir-494:mirbase
Length = 75
Score = 99.6 bits (50), Expect = 3e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 gaaggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacc 69
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4 gaaggagaggttgtc-gtgttgtcttctctttacttatgatgaaacatacacgggaaacc 62
Query: 70 tctttt 75
||||||
Sbjct: 63 tctttt 68
>27765_mml-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28220_mne-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28312_ggo-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28481_hsa-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30101_ppa-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30249_ptr-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30863_ppy-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>27058_eca-mir-154:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| |||||| | ||| ||| |||||||||
Sbjct: 5 aggttatccgtgttgccttcgctttatctgtgacgaatcatacacgg 51
>31890_mmu-mir-154:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| ||||||| ||| ||| |||||||||
Sbjct: 7 aggttatccgtgttgccttcgctttattcgtgacgaatcatacacgg 53
>32761_rno-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgg 63
||||||||||||||| |||| ||||||| ||| ||| |||||||||
Sbjct: 16 aggttatccgtgttgccttcgctttattcgtgacgaatcatacacgg 62
>27248_eca-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 71
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 72 ttttt 76
|||||
Sbjct: 80 ttttt 84
>27989_mml-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 20 ttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>28787_hsa-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 20 ttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>28974_hsa-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 71
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 72 ttttt 76
|||||
Sbjct: 80 ttttt 84
>30466_ptr-mir-539:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 20 ttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 15 ttatccttggtgtgttcgctttatttatgatgaatcataca 55
>31126_ppy-mir-539:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 20 ttatccgtgttgtcttctctttatttatgatgaaacataca 60
|||||| || ||| ||| |||||||||||||||| ||||||
Sbjct: 16 ttatccttggtgtgttcgctttatttatgatgaatcataca 56
>31226_ppy-mir-655:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 71
||||||||||||||||||| | ||| ||| ||| || ||||| ||||| || ||||||
Sbjct: 20 aggagaggttatccgtgttatgttcgcttcattcatcatgaataatacatggttaacctc 79
Query: 72 ttttt 76
|||||
Sbjct: 80 ttttt 84
>33242_bta-mir-154:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctcttttt 76
||||||||||||| | |||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 16 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 75
Query: 77 tagta 81
|||||
Sbjct: 76 tagta 80
>33799_oar-mir-154a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctcttttt 76
||||||||||||| | |||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
Query: 77 tagta 81
|||||
Sbjct: 85 tagta 89
>33800_oar-mir-154a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctcttttt 76
||||||||||||| | |||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
Query: 77 tagta 81
|||||
Sbjct: 85 tagta 89
>33439_bta-mir-655:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgtt 30
|||||||||||||||||||
Sbjct: 20 aggagaggttatccgtgtt 38
>33874_oar-mir-655:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgtt 30
|||||||||||||||||||
Sbjct: 20 aggagaggttatccgtgtt 38
>33875_oar-mir-655:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12 aggagaggttatccgtgtt 30
|||||||||||||||||||
Sbjct: 20 aggagaggttatccgtgtt 38
