miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33799_oar-mir-154a:mirbase
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 tgctaatctgcggaacttgaagataggttatccgtgtagccttcgctttacttgtgacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctaatctgcggaacttgaagataggttatccgtgtagccttcgctttacttgtgacga 60
Query: 61 atcatacacggttcacctattttttagtaccaaatcccgccttgg 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcatacacggttcacctattttttagtaccaaatcccgccttgg 105
>33242_bta-mir-154:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 10 gcggaacttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacac 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggaacttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacac 60
Query: 70 ggttcacctattttttagtaccaa 93
||||||||||||||||||||||||
Sbjct: 61 ggttcacctattttttagtaccaa 84
>27765_mml-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>28220_mne-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>28312_ggo-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>28481_hsa-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>30101_ppa-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>30249_ptr-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>30863_ppy-mir-154:mirbase
Length = 84
Score = 125 bits (63), Expect = 7e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 acttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttc 74
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
Query: 75 acctattttttagtaccaa 93
|||||||||| ||||||||
Sbjct: 66 acctatttttcagtaccaa 84
>32761_rno-mir-154:mirbase
Length = 84
Score = 115 bits (58), Expect = 7e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 16 cttgaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttca 75
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttga 66
Query: 76 cctattttttagtaccaa 93
||||||||| ||||||||
Sbjct: 67 cctatttttcagtaccaa 84
>27058_eca-mir-154:mirbase
Length = 64
Score = 103 bits (52), Expect = 3e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 21 agataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctat 80
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 agataggttatccgtgttgccttcgctttatctgtgacgaatcatacacggttcacctat 60
Query: 81 tttt 84
||||
Sbjct: 61 tttt 64
>31890_mmu-mir-154:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 4e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 19 gaagataggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacct 78
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||
Sbjct: 1 gaagataggttatccgtgttgccttcgctttattcgtgacgaatcatacacggttgacct 60
Query: 79 attttt 84
||||||
Sbjct: 61 attttt 66
>32055_mmu-mir-382:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||||||||||||||| |||||
Sbjct: 29 ttcgctttacttgtgacgaatcattcacgg 58
>32898_rno-mir-382:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||||||||||||||| |||||
Sbjct: 31 ttcgctttacttgtgacgaatcattcacgg 60
>33092_rno-mir-3592:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||||||||||||||| |||||
Sbjct: 69 ttcgctttacttgtgacgaatcattcacgg 40
>26833_cfa-mir-382:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 18 ttcgctttacttatgacgaatcattcacgg 47
>27164_eca-mir-382:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 29 ttcgctttacttatgacgaatcattcacgg 58
>27888_mml-mir-382:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 29 ttcgctttacttatgacgaatcattcacgg 58
>28635_hsa-mir-382:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 29 ttcgctttacttatgacgaatcattcacgg 58
>30362_ptr-mir-382:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 28 ttcgctttacttatgacgaatcattcacgg 57
>33359_bta-mir-382:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 29 ttcgctttacttatgacgaatcattcacgg 58
>33788_bta-mir-3578:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 53 ttcgctttacttatgacgaatcattcacgg 24
>33834_oar-mir-382:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 61 ttcgctttacttatgacgaatcattcacgg 90
>33835_oar-mir-382:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 61 ttcgctttacttatgacgaatcattcacgg 90
>33858_oar-mir-494:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
||||||||||||| | ||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctcttttt 81
Query: 85 tagtaccaaatccc 98
||||| ||||||||
Sbjct: 82 tagtatcaaatccc 95
>33859_oar-mir-494:mirbase
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
||||||||||||| | ||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctcttttt 81
Query: 85 tagtaccaaatccc 98
||||| ||||||||
Sbjct: 82 tagtatcaaatccc 95
>34085_ssc-mir-382:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 42 ttcgctttacttgtgacgaatcatacacgg 71
|||||||||||| ||||||||||| |||||
Sbjct: 28 ttcgctttacttatgacgaatcattcacgg 57
>33399_bta-mir-494:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 25 aggttatccgtgtagccttcgctttacttgtgacgaatcatacacggttcacctattttt 84
||||||||||||| | |||| ||||| || ||| ||| ||||||||| |||| |||||
Sbjct: 17 aggttatccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctcttttt 76
Query: 85 tagta 89
|||||
Sbjct: 77 tagta 81
