miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33802_oar-mir-154b:mirbase
Length = 109
Score = 174 bits (88), Expect = 9e-45
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 1 agagatacttggtggtacttgaagagaggtcttccatggtgcattcgctttattctttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagatacttggtggtacttgaagagaggtcttccatggtgcattcgctttattctttga 60
Query: 61 cgaatcatacatggttgaccnnnnnnnaggtatcaaatctggccttgaa 109
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 cgaatcatacatggttgacctttttttaggtatcaaatctggccttgaa 109
>28312_ggo-mir-154:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
Query: 72 tggttgacc 80
||||||||
Sbjct: 60 cggttgacc 68
>28481_hsa-mir-154:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
Query: 72 tggttgacc 80
||||||||
Sbjct: 60 cggttgacc 68
>30101_ppa-mir-154:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
Query: 72 tggttgacc 80
||||||||
Sbjct: 60 cggttgacc 68
>30249_ptr-mir-154:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
Query: 72 tggttgacc 80
||||||||
Sbjct: 60 cggttgacc 68
>30863_ppy-mir-154:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 gtggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcataca 71
|||||||||||||| |||| ||| || ||| ||||||||||| | ||||||||||||||
Sbjct: 1 gtggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcataca 59
Query: 72 tggttgacc 80
||||||||
Sbjct: 60 cggttgacc 68
>27765_mml-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||||||||||| |||| ||| || ||| ||||||||||| | |||||||||||||| |
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcatacacg 61
Query: 74 gttgacc 80
|||||||
Sbjct: 62 gttgacc 68
>28220_mne-mir-154:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||||||||||| |||| ||| || ||| ||||||||||| | |||||||||||||| |
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcatacacg 61
Query: 74 gttgacc 80
|||||||
Sbjct: 62 gttgacc 68
>32761_rno-mir-154:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 18 cttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatggttg 77
|||||||| |||| ||| || ||| |||||||||||| | ||||||||||||| |||||
Sbjct: 7 cttgaagataggttatccgtgttgccttcgctttattcgt-gacgaatcatacacggttg 65
Query: 78 acc 80
|||
Sbjct: 66 acc 68
>31890_mmu-mir-154:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 8e-05
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 44 ttcgctttattctttgacgaatcatacatggttgacc 80
|||||||||||| | ||||||||||||| ||||||||
Sbjct: 24 ttcgctttattcgt-gacgaatcatacacggttgacc 59
