miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33803_oar-mir-299:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tgccatcgtgcggtacttgaagaaatggtttaccgtcccacatacattctgaatatgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccatcgtgcggtacttgaagaaatggtttaccgtcccacatacattctgaatatgtat 60
Query: 61 gtgggacggtaaaccgcttcttggtatcctgcccagccatcaaa 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgggacggtaaaccgcttcttggtatcctgcccagccatcaaa 104
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 75 ggtttaccgtcccacatacatattcagaatgtatgtgggacggtaaacc 27
>33056_rno-mir-3563:mirbase
Length = 118
Score = 159 bits (80), Expect = 5e-40
Identities = 89/92 (96%)
Strand = Plus / Minus
Query: 10 gcggtacttgaagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacgg 69
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 99 gcggtacttgaagaaatggtttaccgtcccacatacattttgagtatgtatgtgggacgg 40
Query: 70 taaaccgcttcttggtatcctgcccagccatc 101
|||||||||||||||||||| |||||||||||
Sbjct: 39 taaaccgcttcttggtatccagcccagccatc 8
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 34 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 82
>33057_rno-mir-3563:mirbase
Length = 118
Score = 159 bits (80), Expect = 5e-40
Identities = 89/92 (96%)
Strand = Plus / Minus
Query: 10 gcggtacttgaagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacgg 69
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 99 gcggtacttgaagaaatggtttaccgtcccacatacattttgagtatgtatgtgggacgg 40
Query: 70 taaaccgcttcttggtatcctgcccagccatc 101
|||||||||||||||||||| |||||||||||
Sbjct: 39 taaaccgcttcttggtatccagcccagccatc 8
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 34 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 82
>34050_ssc-mir-299:mirbase
Length = 79
Score = 141 bits (71), Expect = 1e-34
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 11 cggtacttgaagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggt 70
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1 cggtacttgaagaaatggtttaccgtcccacatacattttgcatatgtatgtgggacggt 60
Query: 71 aaaccgcttcttggtatcc 89
|||||||||||||||||||
Sbjct: 61 aaaccgcttcttggtatcc 79
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 65 ggtttaccgtcccacatacatatgcaaaatgtatgtgggacggtaaacc 17
>30306_ptr-mir-299:mirbase
Length = 69
Score = 129 bits (65), Expect = 4e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
Query: 80 cttggtatc 88
|||||||||
Sbjct: 61 cttggtatc 69
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>33307_bta-mir-299:mirbase
Length = 63
Score = 125 bits (63), Expect = 7e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattcagaatgtatgtgggacggtaaacc 8
>30924_ppy-mir-299:mirbase
Length = 63
Score = 117 bits (59), Expect = 2e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>30925_ppy-mir-299:mirbase
Length = 63
Score = 117 bits (59), Expect = 2e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>26786_cfa-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 8
>27827_mml-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttcaatatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattgaaaatgtatgtgggacggtaaacc 8
>27828_mml-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttcaatatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatattgaaaatgtatgtgggacggtaaacc 8
>28550_hsa-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
|||||||| |||||||||||| | || |||||||||||||||||||||
Sbjct: 56 ggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>28551_hsa-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
|||||||| |||||||||||| | || |||||||||||||||||||||
Sbjct: 56 ggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>31978_mmu-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 8
>32834_rno-mir-299:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggacggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 73.8 bits (37), Expect = 2e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 56 ggtttaccgtcccacatacatactcaaaatgtatgtgggacggtaaacc 8
>27111_eca-mir-299:mirbase
Length = 63
Score = 101 bits (51), Expect = 1e-22
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 20 aagaaatggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaaccgctt 79
||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtatgtatgtgggatggtaaaccgctt 60
Query: 80 ctt 82
|||
Sbjct: 61 ctt 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 27 ggtttaccgtcccacatacattctgaatatgtatgtgggacggtaaacc 75
|||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct: 56 ggtttaccatcccacatacatactcaaaatgtatgtgggacggtaaacc 8
