miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33806_oar-mir-323a:mirbase
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 ctgctgcttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgctgcttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcac 60
Query: 61 attacacggtcgacctctttgcggtatctaatcccgccttg 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attacacggtcgacctctttgcggtatctaatcccgccttg 101
>34053_ssc-mir-323:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||||||||||||||
Sbjct: 61 ggtcgacctctttgcggtatctaatc 86
>27119_eca-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>27120_eca-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>27836_mml-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>27837_mml-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>28569_hsa-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>28570_hsa-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>30939_ppy-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>30940_ppy-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>31988_mmu-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgcttcatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||||||||||||||
Sbjct: 61 ggtcgacctctttgcggtatctaatc 86
>31989_mmu-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgcttcatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||||||||||||||
Sbjct: 61 ggtcgacctctttgcggtatctaatc 86
>32841_rno-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgcttcatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||||||||||||||
Sbjct: 61 ggtcgacctctttgcggtatctaatc 86
>33317_bta-mir-323:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 8 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacac 60
Query: 68 ggtcgacctctttgcggtatctaatc 93
||||||||||||||| ||||||||||
Sbjct: 61 ggtcgacctctttgcagtatctaatc 86
>30324_ptr-mir-323:mirbase
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 9 tggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtacttggagagaggtggtccgtggcgcgttcgctttatttatggcgcacattacacg 60
Query: 69 gtcgacctctttgcggtatctaatc 93
|||||||||||||| ||||||||||
Sbjct: 61 gtcgacctctttgcagtatctaatc 85
>26795_cfa-mir-323:mirbase
Length = 56
Score = 111 bits (56), Expect = 1e-25
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 23 aggtggtccgtggcgcgttcgctttatttatggcgcacattacacggtcgacctct 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggtggtccgtggcgcgttcgctttatttatggcgcacattacacggtcgacctct 56
>28571_hsa-mir-323b:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 9 tggtacttggagagaggtggtccgtggcgcgttcgctttattta-tggcgcacattacac 67
||||||| |||| ||||| |||||||| | |||||| ||||||| || || || |||||
Sbjct: 1 tggtactcggagggaggttgtccgtggtgagttcgcattatttaatgatgcccaatacac 60
Query: 68 ggtcgacctctttgcggtatc 88
||||||||||||| |||||||
Sbjct: 61 ggtcgacctcttttcggtatc 81
>28572_hsa-mir-323b:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 9 tggtacttggagagaggtggtccgtggcgcgttcgctttattta-tggcgcacattacac 67
||||||| |||| ||||| |||||||| | |||||| ||||||| || || || |||||
Sbjct: 1 tggtactcggagggaggttgtccgtggtgagttcgcattatttaatgatgcccaatacac 60
Query: 68 ggtcgacctctttgcggtatc 88
||||||||||||| |||||||
Sbjct: 61 ggtcgacctcttttcggtatc 81
>33385_bta-mir-453:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 10 ggtacttggagagaggtggtccgtggcgcgttcgctttattta 52
||||||||||| ||||| |||||||| | |||||| |||||||
Sbjct: 31 ggtacttggagggaggttgtccgtggtgagttcgcattattta 73
