miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33809_oar-mir-329a:mirbase
Length = 104
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tgtaattggtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaattggtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaa 60
Query: 61 acacacctggttaaccttttttccagtatcagatcccaccttgg 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acacacctggttaaccttttttccagtatcagatcccaccttgg 104
>33321_bta-mir-329a:mirbase
Length = 83
Score = 157 bits (79), Expect = 2e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gtggtacttgaggagaggttttctaggtctctgtttctttcatgaggatgaaacacacct 60
Query: 69 ggttaaccttttttccagtatca 91
|||||||||||||||||||||||
Sbjct: 61 ggttaaccttttttccagtatca 83
>33811_oar-mir-329b:mirbase
Length = 124
Score = 115 bits (58), Expect = 6e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 10 tggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctg 69
|||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 70 gttaaccttttttccagtatcagatcccaccttg 103
|||||||| ||||||||||||| |||||| ||||
Sbjct: 89 gttaacctcttttccagtatcaaatcccatcttg 122
>33812_oar-mir-329b:mirbase
Length = 124
Score = 115 bits (58), Expect = 6e-27
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 10 tggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctg 69
|||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 70 gttaaccttttttccagtatcagatcccaccttg 103
|||||||| ||||||||||||| |||||| ||||
Sbjct: 89 gttaacctcttttccagtatcaaatcccatcttg 122
>33322_bta-mir-329b:mirbase
Length = 83
Score = 107 bits (54), Expect = 2e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 10 tggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctg 69
|||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
Query: 70 gttaaccttttttccagtatca 91
|||||||| |||||||||||||
Sbjct: 61 gttaacctcttttccagtatca 82
>26801_cfa-mir-329b:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||| ||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>27125_eca-mir-329:mirbase
Length = 98
Score = 103 bits (52), Expect = 2e-23
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
||||||| ||| |||||||||||| ||| || |||||||| |||| ||||||||||||||
Sbjct: 11 gtggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacacct 70
Query: 69 ggttaaccttttttccagtatcagatcc 96
|||||||| ||||||||||||||||||
Sbjct: 71 agttaacctcttttccagtatcagatcc 98
>30946_ppy-mir-329-1:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||| ||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>27841_mml-mir-329-1:mirbase
Length = 84
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
||||||| ||| | |||||||||| ||| || |||||||| |||||||||||||||||||
Sbjct: 1 gtggtacctgaagggaggttttctgggtttctgtttctttaatgaggatgaaacacacct 60
Query: 69 ggttaaccttttttccagtatca 91
||||||||| |||||||||||||
Sbjct: 61 ggttaacctcttttccagtatca 83
>30947_ppy-mir-329-2:mirbase
Length = 83
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
||||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||
Sbjct: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacct 60
Query: 69 ggttaaccttttttccagtatca 91
||||||||| |||||||||||||
Sbjct: 61 ggttaacctcttttccagtatca 83
>27842_mml-mir-329-2:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 6e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 gaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttttt 82
|||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 13 gaggttttctgggtctctgtttctttactgaggatgaaacacacctggttaacctctttt 72
Query: 83 ccagtatc 90
||||||||
Sbjct: 73 ccagtatc 80
>28578_hsa-mir-329-1:mirbase
Length = 80
Score = 95.6 bits (48), Expect = 6e-21
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| ||| || |||||||| ||||||| |||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||| ||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>28579_hsa-mir-329-2:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 9 gtggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacct 68
||||||| ||| |||||||||||| ||| || |||||||| |||||| |||||||||||
Sbjct: 1 gtggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacct 60
Query: 69 ggttaaccttttttccagtatca 91
||||||||| |||||||||||||
Sbjct: 61 ggttaacctcttttccagtatca 83
>30328_ptr-mir-329-1:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 12 gtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggt 71
|||| ||| |||||||||||| ||| || |||||||| ||||||| ||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctggt 60
Query: 72 taaccttttttccagtatc 90
|||||| ||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>30329_ptr-mir-329-2:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 12 gtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggt 71
|||| ||| |||||||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
Query: 72 taaccttttttccagtatc 90
|||||| ||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>31996_mmu-mir-329:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 4e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 21 gagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttt 80
|||||||||||| |||||| |||||||| ||||| |||||||||||| | |||||||||
Sbjct: 22 gagaggttttctgggtctctgtttctttgatgagaatgaaacacacccagctaacctttt 81
Query: 81 ttccagtatcagatcc 96
|| |||||||| ||||
Sbjct: 82 tttcagtatcaaatcc 97
>32850_rno-mir-329:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 4e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 21 gagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttt 80
|||||||||||| |||||| |||||||| ||||| |||||||||||| | |||||||||
Sbjct: 22 gagaggttttctgggtctctgtttctttgatgagaatgaaacacacccagctaacctttt 81
Query: 81 ttccagtatcagatcc 96
|| |||||||| ||||
Sbjct: 82 tttcagtatcaaatcc 97
>26800_cfa-mir-329a:mirbase
Length = 60
Score = 71.9 bits (36), Expect = 9e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 22 agaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacct 77
||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||
Sbjct: 1 agaggttttctgggtttctgtttctttcatgaggatgaaacacacccagttaacct 56
