miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33824_oar-mir-376e:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gctcaatgtttgatattcaaaaggtggatattccttctatgtttacaggattgacagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcaatgtttgatattcaaaaggtggatattccttctatgtttacaggattgacagcta 60
Query: 61 aacatagaggaaaatccacattttaagtatctaaatttgcttttga 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacatagaggaaaatccacattttaagtatctaaatttgcttttga 106
>26826_cfa-mir-376b:mirbase
Length = 99
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcataga 68
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 69 ggaaaatccatgttttcagtatc 91
>33349_bta-mir-376b:mirbase
Length = 93
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct: 4 tttggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcataga 63
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 64 ggaaaatccatgttttcagtatc 86
>33819_oar-mir-376b:mirbase
Length = 106
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcataga 68
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 69 ggaaaatccatgttttcagtatc 91
>33820_oar-mir-376b:mirbase
Length = 106
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct: 9 tttggtatttaaaaggtggatattccttctatgtttacgtgattcatagataatcataga 68
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 69 ggaaaatccatgttttcagtatc 91
>27157_eca-mir-376b:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 6e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| |||||||||||||||||||||||||||| |||| | || ||| |||||||||||
Sbjct: 4 tatttaaaaggtggatattccttctatgtttacgtgattcatagataatcatagaggaaa 63
Query: 74 atccacattttaagtatc 91
||||| |||| ||||||
Sbjct: 64 atccatgttttcagtatc 81
>26825_cfa-mir-376a-3:mirbase
Length = 59
Score = 65.9 bits (33), Expect = 6e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 23 ggtggatattccttctatgtttacaggattgacagctaaacatagaggaaaatccac 79
||||||| |||||||||||||||| ||||| | || ||| |||||||||||||||||
Sbjct: 1 ggtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccac 57
>26827_cfa-mir-376c:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 9e-11
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| ||||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacataga 60
Query: 69 ggaaaatccacattttaagtatc 91
||||| ||||| |||| ||||||
Sbjct: 61 ggaaattccacgttttcagtatc 83
>32047_mmu-mir-376c:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgttta 45
|||| |||| |||||||||||||||||||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatgttta 37
>33350_bta-mir-376c:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgttta 45
|||| |||| |||||||||||||||||||||||||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatgttta 37
>33823_oar-mir-376d:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 7 tgtttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacata 66
|||||| |||| ||||||| ||| ||||||||||| |||| || ||| ||| ||||
Sbjct: 12 tgtttggtatttaaaaggtagattttccttctatggttacgggtttggtgattaatcata 71
Query: 67 gaggaaaatccacattttaagtatc 91
|||||||||||||||||| ||||||
Sbjct: 72 gaggaaaatccacattttcagtatc 96
>32892_rno-mir-376c:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgttta 45
|||| |||||||||||||||||||||||||||
Sbjct: 5 tatttaaaaggtggatattccttctatgttta 36
>34081_ssc-mir-376c:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgttta 45
|||| |||||||||||||||||||||||||||
Sbjct: 1 tatttaaaaggtggatattccttctatgttta 32
>27158_eca-mir-376c:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgttta 45
|||||||||||||||||||||||||||
Sbjct: 1 aaaaggtggatattccttctatgttta 27
>27881_mml-mir-376b:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||| ||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 69
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 70 ggaaaatccatgttttcagtatc 92
>27882_mml-mir-376c:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgttta 45
|||||||||||||||||||||||||||
Sbjct: 1 aaaaggtggatattccttctatgttta 27
>28619_hsa-mir-376b:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||| ||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 69
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 70 ggaaaatccatgttttcagtatc 92
>28620_hsa-mir-376c:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgttta 45
|||||||||||||||||||||||||||
Sbjct: 1 aaaaggtggatattccttctatgttta 27
>30355_ptr-mir-376b:mirbase
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||| ||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 9 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcataga 68
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 69 ggaaaatccatgttttcagtatc 91
>30982_ppy-mir-376b:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||| ||||||||||||||||||||||| |||| | ||| ||||||
Sbjct: 10 tttggtatttaaaacgtggatattccttctatgtttacgtgattcctggataatcataga 69
Query: 69 ggaaaatccacattttaagtatc 91
|||||||||| |||| ||||||
Sbjct: 70 ggaaaatccatgttttcagtatc 92
>30983_ppy-mir-376c:mirbase
Length = 66
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 aaaaggtggatattccttctatgttta 45
|||||||||||||||||||||||||||
Sbjct: 1 aaaaggtggatattccttctatgttta 27
>33821_oar-mir-376c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||| |||||||||| ||| | | ||||||||||
Sbjct: 8 tttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacataga 67
Query: 69 ggaaaatccacattttaagtatc 91
||||| ||||| |||| ||||||
Sbjct: 68 ggaaattccacgttttcagtatc 90
>33822_oar-mir-376c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttacaggattgacagctaaacataga 68
|||| |||| |||||||||||||||| |||||||||| ||| | | ||||||||||
Sbjct: 8 tttggtatttaaaaggtggatattccgtctatgtttatgttatttatggttaaacataga 67
Query: 69 ggaaaatccacattttaagtatc 91
||||| ||||| |||| ||||||
Sbjct: 68 ggaaattccacgttttcagtatc 90
>27880_mml-mir-376a-2:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 74 atccacattttaagtatc 91
|||||| |||| ||||||
Sbjct: 63 atccacgttttcagtatc 80
>28618_hsa-mir-376a-2:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 74 atccacattttaagtatc 91
|||||| |||| ||||||
Sbjct: 63 atccacgttttcagtatc 80
>30354_ptr-mir-376a-2:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 8e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 2 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 61
Query: 74 atccacattttaagtatc 91
|||||| |||| ||||||
Sbjct: 62 atccacgttttcagtatc 79
>30356_ptr-mir-376c:mirbase
Length = 65
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 aaaggtggatattccttctatgttta 45
||||||||||||||||||||||||||
Sbjct: 1 aaaggtggatattccttctatgttta 26
>30981_ppy-mir-376a-2:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 8e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
Query: 74 atccacattttaagtatc 91
|||||| |||| ||||||
Sbjct: 63 atccacgttttcagtatc 80
>32890_rno-mir-376b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttac 46
|||| |||| ||||||||||||||||||||||| ||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatggttac 38
>32891_rno-mir-376b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 9 tttgatattcaaaaggtggatattccttctatgtttac 46
|||| |||| ||||||||||||||||||||||| ||||
Sbjct: 1 tttggtatttaaaaggtggatattccttctatggttac 38
>32046_mmu-mir-376b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttac 46
|||| ||||||||||||||||||||||| ||||
Sbjct: 4 tatttaaaaggtggatattccttctatggttac 36
>34080_ssc-mir-376b:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgttta 45
|||| ||||||||| |||||||||||||||||
Sbjct: 1 tatttaaaaggtggctattccttctatgttta 32
>33351_bta-mir-376d:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 14 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 73
|||| ||||||| ||| ||||||||||| |||| || ||| ||| |||||||||||
Sbjct: 3 tatttaaaaggtagattttccttctatgattacgggtttggtgattaatcatagaggaaa 62
Query: 74 atccacatttt 84
|||||||||||
Sbjct: 63 atccacatttt 73
>33348_bta-mir-376a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 catagaggaaaatccacattttaagtatc 91
||||||||||||||||| |||| ||||||
Sbjct: 63 catagaggaaaatccacgttttcagtatc 91
>33817_oar-mir-376a:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 catagaggaaaatccacattttaagtatc 91
||||||||||||||||| |||| ||||||
Sbjct: 61 catagaggaaaatccacgttttcagtatc 89
>33818_oar-mir-376a:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 catagaggaaaatccacattttaagtatc 91
||||||||||||||||| |||| ||||||
Sbjct: 61 catagaggaaaatccacgttttcagtatc 89
>34079_ssc-mir-376a:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 catagaggaaaatccacattttaagtatc 91
||||||||||||||||| |||| ||||||
Sbjct: 52 catagaggaaaatccacgttttcagtatc 80
