miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33829_oar-mir-379:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 cctgattctggggtcagcaccactccacggttcctgcagagatggtagactatggaacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgattctggggtcagcaccactccacggttcctgcagagatggtagactatggaacgt 60
Query: 61 aggctgtgtgatttctgacctatgtaacacggtccactaactctcagtatccaatccgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggctgtgtgatttctgacctatgtaacacggtccactaactctcagtatccaatccgtc 120
Query: 121 ctcgga 126
||||||
Sbjct: 121 ctcgga 126
>33355_bta-mir-379:mirbase
Length = 86
Score = 145 bits (73), Expect = 9e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 2 ggttcctgcagagatggtagactatggaacgtaggctttgtgatttttgacctatgtaac 61
Query: 89 acggtccactaactctcagtatcca 113
| |||||||||||||||||||||||
Sbjct: 62 atggtccactaactctcagtatcca 86
>32895_rno-mir-379:mirbase
Length = 85
Score = 113 bits (57), Expect = 3e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
||||||||||||| |||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 2 ggttcctgcagaggtggtagactatggaacgtaggcgttatg-tttctgacctatgtaac 60
Query: 89 acggtccactaactctcagtatcca 113
| |||||||||||||||||||||||
Sbjct: 61 atggtccactaactctcagtatcca 85
>27161_eca-mir-379:mirbase
Length = 67
Score = 101 bits (51), Expect = 1e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
|||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 1 agagatggtagactatggaacgtaggctttatgatttttgacctatgtaacatggtccac 60
Query: 98 taactct 104
|||||||
Sbjct: 61 taactct 67
>28632_hsa-mir-379:mirbase
Length = 67
Score = 101 bits (51), Expect = 1e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
Query: 98 taactct 104
|||||||
Sbjct: 61 taactct 67
>30359_ptr-mir-379:mirbase
Length = 66
Score = 99.6 bits (50), Expect = 5e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 39 gagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccact 98
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 1 gagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccact 60
Query: 99 aactct 104
||||||
Sbjct: 61 aactct 66
>26830_cfa-mir-379:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 3e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 43 tggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccactaac 101
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 1 tggtagactatggaacgtaggctttgtgatttttgacctatgtaacatggtccactaac 59
>27885_mml-mir-379:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 98 taactct 104
|||||||
Sbjct: 61 taactct 67
>30986_ppy-mir-379:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 60
Query: 98 taactct 104
|||||||
Sbjct: 61 taactct 67
>32051_mmu-mir-379:mirbase
Length = 66
Score = 77.8 bits (39), Expect = 2e-15
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 38 agagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaacacggtccac 97
||||||||||||||||||||||||||| | || ||| |||||||||||||| |||||||
Sbjct: 1 agagatggtagactatggaacgtaggcgttatg-tttttgacctatgtaacatggtccac 59
Query: 98 taactct 104
|||||||
Sbjct: 60 taactct 66
>33840_oar-mir-411a:mirbase
Length = 125
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatccaatccgtcctcg 124
|||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcctcg 123
>33841_oar-mir-411a:mirbase
Length = 125
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatccaatccgtcctcg 124
|||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 75 tgacgtatgtaacacggtccactaaccctcagtatcaaatccgtcctcg 123
>28641_hsa-mir-411:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatccaatcc 117
|||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatcaaatcc 87
>30366_ptr-mir-411:mirbase
Length = 95
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatccaatcc 117
|||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 45 tgacgtatgtaacacggtccactaaccctcagtatcaaatcc 86
>30995_ppy-mir-411:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatccaatcc 117
|||| ||||||||||||||||||||| ||||||||| |||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatcaaatcc 87
>27170_eca-mir-411:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>27894_mml-mir-411:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32062_mmu-mir-411:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>32905_rno-mir-411:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
>33364_bta-mir-411:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
>34087_ssc-mir-411:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 41 tgacgtatgtaacacggtccactaaccctcagtatc 76
>26838_cfa-mir-411:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaac 101
|||| |||||||||||||||||||||
Sbjct: 32 tgacgtatgtaacacggtccactaac 57
