miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33831_oar-mir-380:mirbase
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ccttcccacggtacctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttcccacggtacctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgta 60
Query: 61 tgtaatgtggtccacgtcttctcaatatcaaattcagtcgcag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtaatgtggtccacgtcttctcaatatcaaattcagtcgcag 103
>33356_bta-mir-380:mirbase
Length = 61
Score = 113 bits (57), Expect = 3e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>33357_bta-mir-380:mirbase
Length = 61
Score = 113 bits (57), Expect = 3e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>33073_rno-mir-3579:mirbase
Length = 113
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 10 ggtacctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtg 69
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||| | ||
Sbjct: 99 ggtacctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatg 40
Query: 70 gtccacgtcttctcaatatcaaa 92
|||||| |||||||| |||||||
Sbjct: 39 gtccacatcttctcattatcaaa 17
>27886_mml-mir-380:mirbase
Length = 61
Score = 89.7 bits (45), Expect = 4e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacgtct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>26831_cfa-mir-380:mirbase
Length = 57
Score = 81.8 bits (41), Expect = 9e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 23 atggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 1 atggttgaccatagaacatgcgctagctctatgtcgtatgtaatatggtccacgtct 57
>27162_eca-mir-380:mirbase
Length = 61
Score = 81.8 bits (41), Expect = 9e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||| ||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 1 aagacggttgaccatagagcatgcgctgtctctaggtcgtatgtaatatggtccacgtct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>28633_hsa-mir-380:mirbase
Length = 61
Score = 81.8 bits (41), Expect = 9e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>32896_rno-mir-380:mirbase
Length = 77
Score = 81.8 bits (41), Expect = 9e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 13 acctgaaaagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtc 72
||||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||||
Sbjct: 1 acctgaaaagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtc 60
Query: 73 cacgtcttctcaatatc 89
||| |||||||| ||||
Sbjct: 61 cacatcttctcattatc 77
>30360_ptr-mir-380:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 4e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 21 agatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtctt 80
||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct: 1 agatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccacatctt 60
>30987_ppy-mir-380:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 4e-16
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccac 75
|||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 1 aagatggttgaccatagaacatgcgctatctctgtgtcgtatgtaatatggtccac 56
>32052_mmu-mir-380:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||| ||| ||||||||||| | |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 80 t 80
|
Sbjct: 61 t 61
>32053_mmu-mir-380:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 20 aagatggttgaccacagaacatgcgctgtctctatgtcgtatgtaatgtggtccacgtct 79
|||||||||||||| |||||||||||| ||| ||||||||||| | |||||||| |||
Sbjct: 1 aagatggttgaccatagaacatgcgctacttctgtgtcgtatgtagtatggtccacatct 60
Query: 80 t 80
|
Sbjct: 61 t 61
