miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33833_oar-mir-381:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 agcgatggacctgcccaatgctactactgtttggtacttaaagcgaggttgccctttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcgatggacctgcccaatgctactactgtttggtacttaaagcgaggttgccctttgta 60
Query: 61 tattcggttttttgacgcagaatatacaagggcaagctctctgtgagtatcaaaccctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattcggttttttgacgcagaatatacaagggcaagctctctgtgagtatcaaaccctgg 120
Query: 121 acccagtc 128
||||||||
Sbjct: 121 acccagtc 128
>26832_cfa-mir-381:mirbase
Length = 75
Score = 125 bits (63), Expect = 8e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatagaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>27163_eca-mir-381:mirbase
Length = 75
Score = 125 bits (63), Expect = 8e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatagaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>33358_bta-mir-381:mirbase
Length = 75
Score = 119 bits (60), Expect = 5e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 42 agcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaagctctc 101
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 8 agcgaggttgccctttgtatattcggttttttgatgtagaatatacaagggcaagctctc 67
Query: 102 tgtgagta 109
||||||||
Sbjct: 68 tgtgagta 75
>27887_mml-mir-381:mirbase
Length = 75
Score = 117 bits (59), Expect = 2e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>28634_hsa-mir-381:mirbase
Length = 75
Score = 117 bits (59), Expect = 2e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>30988_ppy-mir-381:mirbase
Length = 75
Score = 117 bits (59), Expect = 2e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>32054_mmu-mir-381:mirbase
Length = 75
Score = 117 bits (59), Expect = 2e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 1 tacttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggca 60
Query: 95 agctctctgtgagta 109
|||||||||||||||
Sbjct: 61 agctctctgtgagta 75
>30361_ptr-mir-381:mirbase
Length = 74
Score = 115 bits (58), Expect = 8e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 36 acttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaa 95
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 acttaaagcgaggttgccctttgtatattcggtttattgacatggaatatacaagggcaa 60
Query: 96 gctctctgtgagta 109
||||||||||||||
Sbjct: 61 gctctctgtgagta 74
>34084_ssc-mir-381:mirbase
Length = 82
Score = 109 bits (55), Expect = 5e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 32 tggtacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagg 91
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 1 tggtacttaaagcgaggttgccctttgtatattcgg-gttttgaggtggaatatacaagg 59
Query: 92 gcaagctctctgtgagtatcaaa 114
||||||||||||||||||||||
Sbjct: 60 acaagctctctgtgagtatcaaa 82
>32897_rno-mir-381:mirbase
Length = 61
Score = 81.8 bits (41), Expect = 1e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 42 agcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaagctctc 101
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 1 agcgaggttgccctttgtatattcggtttattgacatgggatatacaagggcaagctctc 60
Query: 102 t 102
|
Sbjct: 61 t 61
>29057_hsa-mir-1185-2:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 30 tttggtacttaaagcgaggttgccctttgtat 61
|||||||||||||| |||| | ||||||||||
Sbjct: 1 tttggtacttaaagagaggataccctttgtat 32
>31284_ppy-mir-1185-2:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 30 tttggtacttaaagcgaggttgccctttgtat 61
|||||||||||||| |||| | ||||||||||
Sbjct: 1 tttggtacttaaagagaggataccctttgtat 32
